Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq194 136 4e-27 seq98 114 1e-20 seq103 87.8 2e-12 >seq194 Length=282305 Score = 136 bits (150), Expect = 4e-27 Identities = 367/558 (66%), Gaps = 5/558 (1%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| |||||||||||||| | ||||||||| | ||| || | |||||| ||||| Sbjct 115795 AAACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTGATCAATTCATTGGAAAAGCAG 115854 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | |||||||| | || ||||| || | ||| || || ||| || || || |||||| Sbjct 115855 AGACCGGGCATAAGACCCCGTTTCTTGAGCCAGAAAATGGCACAGAACGAGCCGGAAAAG 115914 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTG--TTGCT 11802 || || || || || || |||||||| || | ||| || | | | || | || Sbjct 115915 AAAATGCCTTCGACGGCCGCAAATGCGACGCAACGTTCGGCAAAGGAAGCATGGTTGGCG 115974 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 | | ||||| |||||| | || ||||||| ||| || | || || || || Sbjct 115975 TCACA-CCATTGCAAGGCCCAGTTGGCCTTCTTTTGTACACACGGGACCGTATCAATGGC 116033 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 || ||||| |||||| | || | | || ||||| || | ||| || Sbjct 116034 CCGCAACAAATGATCTTTTTCCTTGGGGTCACGAATGTAGGTATCAATGAGTAACGAGTA 116093 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 | | || |||||| ||||| | || ||||| |||||||| ||||| || || |||| Sbjct 116094 CGTCTCACTATGAATGTTTTCGACGGCAATTTGGAATCCATAAAAACAGCGGGCTTCTGG 116153 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 | || | || | |||| ||| ||| ||||| ||||| |||||||| || | Sbjct 116154 TGATTGAATTTCGGTACAAAAGTTTTGCGCCAAATTTTCATTCACAATACCGTCCGAGGC 116213 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCA 12102 ||||| || || | | ||| | ||||| | ||||| | | || || | ||| Sbjct 116214 GGCAAAGAACGCCAAAACGTGTGACACAAAGTGTCGTTCGTTGCTGGACAAATTCTTCCA 116273 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 ||| | ||||| | | ||||| | |||||| | ||||| ||| || | | || Sbjct 116274 ATCTTGCAAATCACTGGCCAAATCAATTTCTTCGGCCGTCCAGAAAGAAGCTTCGGCTTT 116333 Query 12163 TTTATACATTTTCCAGAT 12180 ||| ||||||| |||||| Sbjct 116334 TTTGTACATTTGCCAGAT 116351 >seq98 Length=427084 Score = 114 bits (126), Expect = 1e-20 Identities = 365/563 (65%), Gaps = 5/563 (1%) Strand=Plus/Plus Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 ||| || ||| |||||||||||||| | ||||||||| | ||| || | ||| || |||| Sbjct 135029 ACAGTAGACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTAATCAATTCGTTGGAAA 135088 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG 11741 | | |||||||| | || ||||| || | |||||| || ||| ||| ||||| | Sbjct 135089 AGCAAAGACCGGGCATGAGACCCCGTTTCTTGAGCCAAAAAATGGCACAAAAGGAACCGG 135148 Query 11742 AAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCTTGT 11798 ||||||| || || || || || ||||| || || | ||| || | | |||| Sbjct 135149 AAAAGAAAATGCCTTCGACGGCCGCAAAGGCGACACAGCGTTCCGCAAAGGAAGCGTTGT 135208 Query 11799 T-GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 | || | | ||||| |||||||| || ||||||| ||| || | || || Sbjct 135209 TCGCGTCACA-CCATTGCAAGGCCCAATGGGCCTTCTTTTGTACACACGGAACCGTATCA 135267 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || || || ||||| || ||| | ||| | | || ||||| || || | | Sbjct 135268 ATGGCCCGCAACAAATGATCCTTCTCTTTCGGATCGCGAATGTACGTATCAATCAAAAGA 135327 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||| |||| ||||| ||||| | || ||||| ||||| || ||||| || || Sbjct 135328 GAATAGGTTTCGCTGTGAATGTTTTCGACGGCAATTTGGAATCCGTAAAAACAACGGGCT 135387 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 || | | || | || | |||| ||| || ||||| ||||| ||||| || || Sbjct 135388 TCCGGCGATTGAATTTCGGTACAAAAGTTTTGTGCCAAATTTTCATTCACAATGCCGTCG 135447 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA 12097 | ||||| || || | | || | ||||| ||||| | | || | Sbjct 135448 GACGCGGCAAAGAACGCCAACACGTGCGACACAAAGTGACGTTCGTTGCTCGACAAATGT 135507 Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 | |||||| | ||||| | | | ||| | |||||| | |||||||| || | Sbjct 135508 TTCCAATCTTGCAAATCACTGGCGAGATCAATTTCTTCGGCCGTCCAAAAGGAAGCTTCG 135567 Query 12158 GATTGTTTATACATTTTCCAGAT 12180 | || ||| ||||||| |||||| Sbjct 135568 GCTTTTTTGTACATTTGCCAGAT 135590 >seq103 Length=133562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| ||| || || ||||| || | ||| || |||||||| || || ||| Sbjct 27655 CAGGCAAACGAACAGTGCAATCCTTCATCACGACTAATGAGTTCATTGCTGAACGTCAAT 27596 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 |||||||| | ||| ||||| || | |||||| || ||| ||| | || |||||||| Sbjct 27595 CCGGGCATGAGTCCCCGTTTCTTGAGCCAAAAAATGGCACAAAAGGCGCCCGAAAAGAAG 27536 Query 11750 ATTCCCTCCACAGCTGCAAATGCTAC 11775 || || ||||| || ||||| || || Sbjct 27535 ATGCCTTCCACGGCCGCAAAGGCCAC 27510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523072314800