Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq41 104 2e-17 seq142 102 8e-17 seq232 100 3e-16 seq82 89.7 5e-13 seq168 82.4 8e-11 >seq41 Length=265118 Score = 104 bits (114), Expect = 2e-17 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 |||||| || || || |||||||| | || | ||| || |||||||| || ||||| Sbjct 262722 ATGGCCACCGCGCAATCGCAAAACGAGATGCAAAGTACTTTCCTTTTGAATATTGTAATC 262781 Query 139594 GCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 139652 ||||| |||| || | || || | ||| || || ||| | || ||||||||||| || | Sbjct 262782 GCTCAAAGTGCGTCCA-TCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCG 262840 Query 139653 GAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGC 139711 | || || ||||| ||||| ||| | || || || | | || | ||||| | ||| Sbjct 262841 GCGGAATACCTTCCTTGTC-TTGAATCTTGGTCTTGACATTATCGATCGTGTCCGACGGC 262899 Query 139712 TCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || | || | || ||||||||||| ||||| ||||| || || || Sbjct 262900 TCGACATCGAGCGTAATAGTTTTGCCGGTCAAGGTTTTGACGAAAATCTGAAT 262952 >seq142 Length=241092 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||||||| ||||| | || || ||||||||||| || ||||| ||| Sbjct 170317 CCACCTCGGAGACGCAAAACCAAGTGCAAGGTGGATTCTTTTTGAATATTGTAATCACTC 170376 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||| || | |||| ||||| ||||| || || Sbjct 170377 AAAGTACGTCCA-TCTTCCAATTGTTTACCGGCGAAAATCAATCGTTGTTGATCCGGGGG 170435 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || || | ||||| || Sbjct 170436 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTATCCGAAGGCTCAAC 170495 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || |||| || |||||||| |||||||| Sbjct 170496 GTCCAGGGTAATGGTCTTACCCGTCAGTGTCTTTACGAAAATTTGCAT 170543 >seq232 Length=134552 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATA 139632 || |||||||| || |||||||| | |||| || | ||||| | ||| ||||| ||| | Sbjct 133079 TCCTTTTGAATATTGTAATCGCTTAAAGTGCGTCCA-TCTTCCAACTGCTTACCGGCAAA 133137 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 || ||||||||||| || ||||| || ||||| ||||| |||||| || | | Sbjct 133138 AATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCTTGGATTTTGGTCTTGACATT 133197 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||| | ||||| || |||| || | || || |||||||| ||||| || Sbjct 133198 ATCGATCGTGTCCGACGGCTCGACGTCAAGCGTAATAGTTTTTCCGGTCAAAGTTTTGAC 133257 Query 139753 GAATATTTGCAT 139764 ||| || || || Sbjct 133258 GAAAATCTGAAT 133269 >seq82 Length=265081 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || || ||||| || | || | ||| || |||||||| || |||||| Sbjct 263003 TGGCCACCGCGCAATCGCAAGACAAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCG 263062 Query 139595 CTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 |||| |||| || | || || | ||| || || ||| | || ||||||||||| || || Sbjct 263063 CTCAAAGTGCGTCCA-TCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGG 263121 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 ||| || ||||| ||||| ||| | || || || | | || | ||||| | |||| Sbjct 263122 AGGAATACCTTCCTTGTC-TTGAATCTTGGTCTTGACATTATCAATCGTGTCCGACGGCT 263180 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | || | || || || ||||| ||||| || || || || || Sbjct 263181 CGACATCGAGCGTAATAGTTTTTCCAGTCAAGGTTTTGACAAAAATCTGAAT 263232 >seq168 Length=39825 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 154097 GCCTTTACGCTTGCCGCC---CTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAG 154153 ||||||||||||||| || ||||| || | |||| || | |||||||| || ||||| Sbjct 28958 GCCTTTACGCTTGCCACCACCCTGATCCACATAACGCGCCGTGTTGTTGAAGACGCGAAG 28899 Query 154154 CATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTGTTGCGGCCTCG 154213 |||||| | | |||| | | || ||||| ||| ||| | | |||| | |||| Sbjct 28898 CATGGGCACAATACCGTTCGATGTTCCGTTGGTACCCCGAATGTAGGATTTGCTGGCTCG 28839 Query 154214 AACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCA 154267 || | ||| | | | || ||||| ||| ||| |||||||| |||||||| Sbjct 28838 AATGTTGTGAATGGCGAGACCGATACCTCCGGCGTACTTGGAGATGATGGCGCA 28785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062170764000