Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq98 149 6e-31 seq194 131 2e-25 >seq98 Length=427084 Score = 149 bits (164), Expect = 6e-31 Identities = 374/565 (66%), Gaps = 14/565 (2%) Strand=Plus/Plus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 || ||| |||||||||||||| || || || || | |||||| | |||||| ||||| Sbjct 135033 TAGACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTAATCAATTCGTTGGAAAAGCA 135092 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 | || ||||| | || ||||| || | |||||| || ||| ||| || |||||||| Sbjct 135093 AAGACCGGGCATGAGACCCCGTTTCTTGAGCCAAAAAATGGCACAAAAGGAACCGGAAAA 135152 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || || || || || ||||| || | | ||||| |||| || || ||||| Sbjct 135153 GAAAATGCCTTCGACGGCCGCAAAGGCGACACAGCGTTCCGCAAAGGAAGC---GTTGTT 135209 Query 14048 CG----ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14103 || | | ||||| ||||| | | || |||| | | | | || |||| Sbjct 135210 CGCGTCACA-CCATTGCAAGGCCCAATGGGCCTTCTTTTGTACACACGGAACCGTATCAA 135268 Query 14104 TAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14163 | || || |||| ||||||||||| | | |||||| |||||||| | | Sbjct 135269 TGGCCCGCAACAAATGATCCTTCTCTTTCGGATCGCGAATGTACGTATCAATCAAAAGAG 135328 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 ||| |||| ||| |||||||| | || || || || || ||||| || | |||| Sbjct 135329 AATAGGTTTCGCTGTGAATGTTTTCGACGGCAATTTGGAATCCGTAAAAACAACGGGCTT 135388 Query 14224 CCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 ||| | |||| | ||| | |||| ||| |||||||||||||| || || || || Sbjct 135389 CCGGCGATTGAATTTCGGTACAAAAGTTTTGTGCCAAATTTTCATTCACAATGCCGTCGG 135448 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT---GAGTT 14340 || ||||| || ||||| | || | |||| || ||| ||| | | | Sbjct 135449 ACGCGGCAAAGAACGCCAACACGTGCGACACAAAG---TGACGTTCGTTGCTCGACAAAT 135505 Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 ||||||||| ||||| | | ||||| | ||| || | |||||||| ||| Sbjct 135506 GTTTCCAATCTTGCAAATCACTGGCGAGATCAATTTCTTCGGCCGTCCAAAAGGAAGCTT 135565 Query 14401 CAGCTTTTTTATACATTACCCATAT 14425 | |||||||| |||||| ||| || Sbjct 135566 CGGCTTTTTTGTACATTTGCCAGAT 135590 >seq194 Length=282305 Score = 131 bits (144), Expect = 2e-25 Identities = 368/561 (66%), Gaps = 8/561 (1%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| |||||||||||||| || || || || | ||| || | ||| || ||||| Sbjct 115795 AAACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTGATCAATTCATTGGAAAAGCAG 115854 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 | || ||||| | || ||||| || | ||| || || ||| || || ||||||||| Sbjct 115855 AGACCGGGCATAAGACCCCGTTTCTTGAGCCAGAAAATGGCACAGAACGAGCCGGAAAAG 115914 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || || || || || ||||| || | | ||||| |||| || || | ||| | Sbjct 115915 AAAATGCCTTCGACGGCCGCAAATGCGACGCAACGTTCGGCAAAGGAAGCATGGTTGG-C 115973 Query 14049 GATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 | | | || | || |||| | | || |||| | | | | || ||||| || Sbjct 115974 GTCACACCATTGCAAGGCCCAGTTGGCCTTCTTTTGTACACACGGGACCGTATCAATGGC 116033 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 || |||| || || || || | |||||| |||||||| ||||| || Sbjct 116034 CCGCAACAAATGATCTTTTTCCTTGGGGTCACGAATGTAGGTATCAATGAGTAACGAGTA 116093 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 | | ||| || |||||||| | || || || || |||||||| || | ||||| | Sbjct 116094 CGTCTCACTATGAATGTTTTCGACGGCAATTTGGAATCCATAAAAACAGCGGGCTTCTGG 116153 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 |||| | ||| | |||| ||| |||||||||||||| || ||||| || || Sbjct 116154 TGATTGAATTTCGGTACAAAAGTTTTGCGCCAAATTTTCATTCACAATACCGTCCGAGGC 116213 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG---AGTTTTTT 14344 ||||| || ||||| | || | | ||||| | | ||| ||| || | || || Sbjct 116214 GGCAAAGAACGCCAAAACGTGTGACACAAAGTGTCG---TTCGTTGCTGGACAAATTCTT 116270 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 |||||| ||||| | | | ||| | ||| || | ||||| ||| ||| | || Sbjct 116271 CCAATCTTGCAAATCACTGGCCAAATCAATTTCTTCGGCCGTCCAGAAAGAAGCTTCGGC 116330 Query 14405 TTTTTTATACATTACCCATAT 14425 |||||| |||||| ||| || Sbjct 116331 TTTTTTGTACATTTGCCAGAT 116351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726231003000