Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq98 141 9e-29 seq194 136 4e-27 >seq98 Length=427084 Score = 141 bits (156), Expect = 9e-29 Identities = 371/562 (66%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 || ||| |||||||||||||| || || || || | |||||| | |||||| ||||| Sbjct 135033 TAGACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTAATCAATTCGTTGGAAAAGCA 135092 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 | || ||||| | || ||||| || | |||||| || ||| || || |||||||| Sbjct 135093 AAGACCGGGCATGAGACCCCGTTTCTTGAGCCAAAAAATGGCACAAAAGGAACCGGAAAA 135152 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC-TTTTTTGT 13834 ||| || || || || || ||||| || | ||||| |||| || || || || | Sbjct 135153 GAAAATGCCTTCGACGGCCGCAAAGGCGACACAGCGTTCCGCAAAGGAAGCGTTGTTCGC 135212 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 | | | ||||| ||||| | | || |||| | | | | || || || | Sbjct 135213 GTCACA-CCATTGCAAGGCCCAATGGGCCTTCTTTTGTACACACGGAACCGTATCAATGG 135271 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 | || ||||| ||||||||||| | | |||||| |||||||| | | || Sbjct 135272 CCCGCAACAAATGATCCTTCTCTTTCGGATCGCGAATGTACGTATCAATCAAAAGAGAAT 135331 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 | |||| ||| |||||||| | || || || || || |||||||| | ||||| | Sbjct 135332 AGGTTTCGCTGTGAATGTTTTCGACGGCAATTTGGAATCCGTAAAAACAACGGGCTTCCG 135391 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 | |||| | || | |||| ||| |||||| |||||||| ||||| || || | Sbjct 135392 GCGATTGAATTTCGGTACAAAAGTTTTGTGCCAAATTTTCATTCACAATGCCGTCGGACG 135451 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT---GAGTTTTT 14131 | ||||| || ||||| | || | |||| || ||| ||| | | | || Sbjct 135452 CGGCAAAGAACGCCAACACGTGCGACACAAAG---TGACGTTCGTTGCTCGACAAATGTT 135508 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 ||||||| ||||| | | ||||| | ||| || | |||||||| ||| | | Sbjct 135509 TCCAATCTTGCAAATCACTGGCGAGATCAATTTCTTCGGCCGTCCAAAAGGAAGCTTCGG 135568 Query 14192 CTTTTTTATACATTACCCATAT 14213 ||||||| |||||| ||| || Sbjct 135569 CTTTTTTGTACATTTGCCAGAT 135590 >seq194 Length=282305 Score = 136 bits (150), Expect = 4e-27 Identities = 369/561 (66%), Gaps = 8/561 (1%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| |||||||||||||| || || || || | ||| || | ||| || ||||| Sbjct 115795 AAACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTGATCAATTCATTGGAAAAGCAG 115854 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | || ||||| | || ||||| || | ||| || || ||| ||| || ||||||||| Sbjct 115855 AGACCGGGCATAAGACCCCGTTTCTTGAGCCAGAAAATGGCACAGAACGAGCCGGAAAAG 115914 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT- 13835 || || || || || || ||||| || | ||||| |||| || || | ||| Sbjct 115915 AAAATGCCTTCGACGGCCGCAAATGCGACGCAACGTTCGGCAAAGGAAGCATGGTTGGCG 115974 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 | | | ||||| ||||| | | || |||| | | | | || || || || Sbjct 115975 TCACA-CCATTGCAAGGCCCAGTTGGCCTTCTTTTGTACACACGGGACCGTATCAATGGC 116033 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 || ||||| || || || || | |||||| |||||||| ||||| || Sbjct 116034 CCGCAACAAATGATCTTTTTCCTTGGGGTCACGAATGTAGGTATCAATGAGTAACGAGTA 116093 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 | | ||| || |||||||| | || || || || ||||||||||| | ||||||| Sbjct 116094 CGTCTCACTATGAATGTTTTCGACGGCAATTTGGAATCCATAAAAACAGCGGGCTTCTGG 116153 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 |||| | || | |||| ||| ||||| |||||||| |||||||| || || Sbjct 116154 TGATTGAATTTCGGTACAAAAGTTTTGCGCCAAATTTTCATTCACAATACCGTCCGAGGC 116213 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG---AGTTTTTT 14132 ||||| || ||||| | || | | ||||| | | ||| ||| || | || || Sbjct 116214 GGCAAAGAACGCCAAAACGTGTGACACAAAGTGTCG---TTCGTTGCTGGACAAATTCTT 116270 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 |||||| ||||| | | | ||| | ||| || | ||||| ||| ||| | || Sbjct 116271 CCAATCTTGCAAATCACTGGCCAAATCAATTTCTTCGGCCGTCCAGAAAGAAGCTTCGGC 116330 Query 14193 TTTTTTATACATTACCCATAT 14213 |||||| |||||| ||| || Sbjct 116331 TTTTTTGTACATTTGCCAGAT 116351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587035203800