Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq82 102 6e-17 seq232 98.7 8e-16 seq41 96.9 3e-15 seq142 95.1 9e-15 seq226 89.7 4e-13 seq67 89.7 4e-13 >seq82 Length=265081 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42879 GTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATC 42938 || ||| || |||| || || || | ||| | ||| || |||||||| | ||||||||| Sbjct 263002 GTGGCCACCGCGCAATCGCAAGACAAGATGCAAAGTACTTTCCTTTTGAATATTGTAATC 263061 Query 42939 GGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGC 42998 | ||| || ||| | || ||||| || || ||||||||||| | || || || || | Sbjct 263062 GCTCAAAGTGCGTCCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGG 263121 Query 42999 CGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 || | |||||| || || ||| ||||| | ||| ||||| | ||| Sbjct 263122 AGGAATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTATCAATCGTGTCCGACGGCTC 263181 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || | ||| ||||||||||| || | ||||| |||||||| || || Sbjct 263182 GACATCGAGCGTAATAGTTTTTCCAGTCAAGGTTTTGACAAAAATCTGAAT 263232 >seq232 Length=134552 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||| || | || | ||| | |||||| |||||||| | |||||||||| Sbjct 133043 CCACCGCGCAATCGCAGAACAAGATGCAAAGTGCTTTCCTTTTGAATATTGTAATCGCTT 133102 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || ||||| || || ||||||||||| | || || || || | || Sbjct 133103 AAAGTGCGTCCATCTTCCAACTGCTTACCGGCAAAAATGAGACGTTGCTGGTCCGGAGGA 133162 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| ||||| | | | ||||| | ||||||| Sbjct 133163 ATACCTTCCTTGTCTTGGATTTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGACG 133222 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| |||||||||||||| | |||||| || ||||| || || Sbjct 133223 TCAAGCGTAATAGTTTTTCCGGTCAAAGTTTTGACGAAAATCTGAAT 133269 >seq41 Length=265118 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || |||| || || || | ||| | ||| || |||||||| | |||||||||| Sbjct 262725 GCCACCGCGCAATCGCAAAACGAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCT 262784 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| | || ||||| || || ||||||||||| | || || || || | ||| Sbjct 262785 CAAAGTGCGTCCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGCGG 262844 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| ||||| | | | ||||| | |||||| Sbjct 262845 AATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGAC 262904 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| |||||||| ||||| | ||||| || ||||| || || Sbjct 262905 ATCGAGCGTAATAGTTTTGCCGGTCAAGGTTTTGACGAAAATCTGAAT 262952 >seq142 Length=241092 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | ||| || ||||| | ||||||||| ||| |||||| | || Sbjct 170332 AAAACCAAGTGCAAGGTGGATTCTTTTTGAATATTGTAATCACTCAAAGTACGTCCATCT 170391 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 ||||||||||| ||||| ||||||||||| |||||||| | || | || || || || Sbjct 170392 TCCAATTGTTTACCGGCGAAAATCAATCGTTGTTGATCCGGGGGAATTCCCTCCTTGTCT 170451 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| ||||| || | | || || || ||| ||||| | || || || Sbjct 170452 TGGATCTTGGTCTTGACGTTGTCGATCGTATCCGAAGGCTCAACGTCCAGGGTAATGGTC 170511 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || || || || ||||||||||| Sbjct 170512 TTACCCGTCAGTGTCTTTACGAAAATTTGCAT 170543 >seq226 Length=603765 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | |||||||| || | ||| |||||| || | ||||| ||| | Sbjct 85854 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 85913 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || | || || |||||||| ||||| ||||||||||| | ||| Sbjct 85914 AACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCAGGCGGA 85973 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| ||||| || | | ||||| | ||| || Sbjct 85974 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAGGGCTCAACA 86033 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| | ||| || || ||||| ||||| Sbjct 86034 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 86080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 |||||||| || | ||| |||||| || | ||||| ||| ||| || || |||| Sbjct 85641 AACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCC 85700 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | || || |||||||| ||||| ||||||||||| | ||| | ||||| || || Sbjct 85701 TCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCAGGCGGAATTCCTTCCTTGTCC 85760 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| ||||| || | | ||||| | ||| || || | || || || Sbjct 85761 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAGGGCTCAACATCGAGGGTGATGGTC 85820 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||| | ||| || || ||||| ||||| Sbjct 85821 TTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 85852 >seq67 Length=439500 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | ||||||||| ||| |||||| | || ||||||||||| ||||| ||| Sbjct 2879 TCTTTCTGAATATTGTAATCACTCAACGTACGTCCATCTTCCAATTGTTTACCGGCGAAA 2938 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||| |||||||| | || | || || || || |||| ||||| || Sbjct 2939 ATCAATCGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTG 2998 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| | ||| ||||| | || || || || || || || || || || Sbjct 2999 TCGATCGTGTCCGACGGCTCAACGTCCAGGGTAATGGTCTTACCCGTCAGTGTCTTTACG 3058 Query 43099 AAAATTTGCATTTTCTTAATTTTATT 43124 ||||||||||| | || ||| |||| Sbjct 3059 AAAATTTGCATGATGTT-ATTCTATT 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368228857110