Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq142 109 4e-19 seq67 102 5e-17 seq82 93.3 3e-14 seq41 89.7 3e-13 seq232 82.4 5e-11 >seq142 Length=241092 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| |||| | ||||| ||||| ||||| || || |||||||| |||||||||||| Sbjct 170315 CACCACCTCGGAGACGCAAAACCAAGTGCAAGGTGGATTCTTTTTGAATATTGTAATCAC 170374 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 |||| | || || |||||||| || || || || || ||||| || |||| || Sbjct 170375 TCAAAGTACGTCCATCTTCCAATTGTTTACCGGCGAAAATCAATCGTTGTTGATCCGGGG 170434 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || || || || || ||| || || | | ||||| || || | || Sbjct 170435 GAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTATCCGAAGGCTCAA 170494 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||||| || || || || ||||| || || |||||||||||||||||| Sbjct 170495 CGTCCAGGGTAATGGTCTTACCCGTCAGTGTCTTTACGAAAATTTGCATG 170544 >seq67 Length=439500 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| ||||| || || ||||| || |||||||||||| ||| | || Sbjct 2855 CGCAAAACCAAGTGCAAGGTAGATTCTTTCTGAATATTGTAATCACTCAACGTACGTCCA 2914 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || || || || ||||| || |||| ||| || || || || Sbjct 2915 TCTTCCAATTGTTTACCGGCGAAAATCAATCGTTGTTGATCCGGGGGAATTCCCTCCTTG 2974 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| || || | | |||||||| || | ||||||||| || || Sbjct 2975 TCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCCAGGGTAATG 3034 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || || |||||||||||||||||| Sbjct 3035 GTCTTACCCGTCAGTGTCTTTACGAAAATTTGCATG 3070 >seq82 Length=265081 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || ||||| || | |||||| || || ||||| ||||||||||| |||| || || Sbjct 263015 AATCGCAAGACAAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTCAAAGTGCGT 263074 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||| |||||||| ||| || | |||||||||||||| || || ||||| Sbjct 263075 CCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGAGGAATACCTTCC 263134 Query 33272 TTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || |||| || || | | ||||||||| || | || || || || Sbjct 263135 TTGTCTTGAATCTTGGTCTTGACATTATCAATCGTGTCCGACGGCTCGACATCGAGCGTA 263194 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| || | ||||| || ||||| || ||| Sbjct 263195 ATAGTTTTTCCAGTCAAGGTTTTGACAAAAATCTGAATG 263233 >seq41 Length=265118 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || ||||| || | |||||| || || ||||| ||||||||||| |||| || || Sbjct 262735 AATCGCAAAACGAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTCAAAGTGCGT 262794 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||| |||||||| ||| || | |||||||||||||| || || ||||| Sbjct 262795 CCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGCGGAATACCTTCC 262854 Query 33272 TTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || |||| || || | | |||||||| || | || || || || Sbjct 262855 TTGTCTTGAATCTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGACATCGAGCGTA 262914 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || | ||||| |||||||| || ||| Sbjct 262915 ATAGTTTTGCCGGTCAAGGTTTTGACGAAAATCTGAATG 262953 >seq232 Length=134552 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || |||| || | |||||| || || ||||| ||||||||||| ||| || || Sbjct 133052 AATCGCAGAACAAGATGCAAAGTGCTTTCCTTTTGAATATTGTAATCGCTTAAAGTGCGT 133111 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||| ||||| || ||| || | |||||||||||||| || || ||||| Sbjct 133112 CCATCTTCCAACTGCTTACCGGCAAAAATGAGACGTTGCTGGTCCGGAGGAATACCTTCC 133171 Query 33272 TT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGA 33328 || || | | | | | || || | | |||||||| || | ||||| || Sbjct 133172 TTGTCTTGGATTTTGGTC---TTGACATTATCGATCGTGTCCGACGGCTCGACGTCAAGC 133228 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || |||||||| || | |||||| |||||||| || ||| Sbjct 133229 GTAATAGTTTTTCCGGTCAAAGTTTTGACGAAAATCTGAATG 133270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776453894910