Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq82 127 1e-24 seq232 120 2e-22 seq41 118 8e-22 seq142 91.5 1e-13 seq67 86.0 4e-12 >seq82 Length=265081 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||||| || || | ||| | || || || ||||||||||| |||||| | Sbjct 263006 CCACCGCGCAATCGCAAGACAAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTC 263065 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || |||| ||||| || ||||| ||||| || | |||||||||||| |||| Sbjct 263066 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGAGGA 263125 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| || ||| ||| || ||||| || ||| || || | |||||| ||| Sbjct 263126 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTATCAATCGTGTCCGACGGCTCGACA 263185 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| |||||| ||||| || || || || || ||||| || || ||| Sbjct 263186 TCGAGCGTAATAGTTTTTCCAGTCAAGGTTTTGACAAAAATCTGAATG 263233 >seq232 Length=134552 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || | ||||| | || | ||| | ||||| || ||||||||||| |||||| | Sbjct 133042 ACCACCGCGCAATCGCAGAACAAGATGCAAAGTGCTTTCCTTTTGAATATTGTAATCGCT 133101 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| || |||| ||||| || || || ||||| || | |||||||||||| |||| Sbjct 133102 TAAAGTGCGTCCATCTTCCAACTGCTTACCGGCAAAAATGAGACGTTGCTGGTCCGGAGG 133161 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||||| ||||| || | | || || | |||||| || Sbjct 133162 AATACCTTCCTTGTCTTGGATTTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGAC 133221 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | |||||| ||||| ||||| ||||| || || || || || ||| Sbjct 133222 GTCAAGCGTAATAGTTTTTCCGGTCAAAGTTTTGACGAAAATCTGAATG 133270 >seq41 Length=265118 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||||| || || | ||| | || || || ||||||||||| |||||| | Sbjct 262726 CCACCGCGCAATCGCAAAACGAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTC 262785 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || |||| ||||| || ||||| ||||| || | |||||||||||| | || Sbjct 262786 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGCGGA 262845 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| || ||| ||| || ||||| || | | || || | |||||| ||| Sbjct 262846 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGACA 262905 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| |||||| ||||| ||||| || || || || || || || ||| Sbjct 262906 TCGAGCGTAATAGTTTTGCCGGTCAAGGTTTTGACGAAAATCTGAATG 262953 >seq142 Length=241092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || | ||| |||||||||||||| ||||| | || ||| |||| Sbjct 170332 AAAACCAAGTGCAAGGTGGATTCTTTTTGAATATTGTAATCACTCAAAGTACGTCCATCT 170391 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || || || ||||| ||||| || ||| | || | || || || ||| Sbjct 170392 TCCAATTGTTTACCGGCGAAAATCAATCGTTGTTGATCCGGGGGAATTCCCTCCTTGTCT 170451 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || ||||| | | | ||||| | ||||| || || | ||||| || Sbjct 170452 TGGATCTTGGTCTTGACGTTGTCGATCGTATCCGAAGGCTCAACGTCCAGGGTAATGGTC 170511 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || | ||||| || || ||||||||| Sbjct 170512 TTACCCGTCAGTGTCTTTACGAAAATTTGCATG 170544 >seq67 Length=439500 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| ||||| | || ||| |||| ||||||||||| || || || Sbjct 2879 TCTTTCTGAATATTGTAATCACTCAACGTACGTCCATCTTCCAATTGTTTACCGGCGAAA 2938 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||| || ||| | || | || || || ||| || || ||||| | Sbjct 2939 ATCAATCGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTG 2998 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | || || | |||||| || || | ||||| || ||||| || | ||||| || Sbjct 2999 TCGATCGTGTCCGACGGCTCAACGTCCAGGGTAATGGTCTTACCCGTCAGTGTCTTTACG 3058 Query 44111 AATATTTGCATG 44122 || ||||||||| Sbjct 3059 AAAATTTGCATG 3070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776324463660