Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq120 127 5e-24 seq67 109 1e-18 seq31 107 4e-18 seq226 105 2e-17 seq98 91.5 3e-13 seq208 87.8 4e-12 >seq2 Length=622807 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || |||||||||||||| || ||||| || || |||| ||| ||| Sbjct 352863 AGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGACAGTGTTCGACCATCT 352922 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||||| || ||||| | | ||||||||| ||||| ||||| || || ||| Sbjct 352923 TCCAACTGTTTTCCGGCGAAAATCAAACGCTGTTGATCCGGAGGAATTCCCTCCTTGTCC 352982 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || ||||| || | || || || || || || || || || ||| Sbjct 352983 TGGATCTTGGTCTTGACATTATCGATAGTGTCAGACGGCTCGACATCGAGCGTGATGGTC 353042 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | || ||||| || || |||||| Sbjct 353043 TTACCCGTCAAGGTCTTTACGAAGATTTGCATT 353075 >seq120 Length=609189 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || ||||||||||| || || || || || || |||| ||| ||| Sbjct 561995 AGAACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAATCGGACAGTGTTCGACCATCT 561936 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||||| || ||||| || | ||||||||| ||||| ||||| || || ||| Sbjct 561935 TCCAACTGTTTTCCGGCGAAAATCAGACGCTGTTGATCCGGAGGAATTCCCTCCTTGTCC 561876 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || ||||| || | || || || || || || || || || ||| Sbjct 561875 TGGATCTTGGTCTTGACATTATCGATAGTGTCAGACGGCTCGACATCGAGCGTGATGGTC 561816 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | || ||||| || || |||||| Sbjct 561815 TTACCCGTCAAGGTCTTTACGAAGATTTGCATT 561783 >seq67 Length=439500 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || |||||||||||||||||||| || ||| | || | || ||||| | |||| Sbjct 2867 TGCAAGGTAGATTCTTTCTGAATATTGTAATCACTCAACGTACGTCCATCTTCCAATTGT 2926 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| | | |||||||| || || ||||| || || || || ||||| Sbjct 2927 TTACCGGCGAAAATCAATCGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGGATCTTG 2986 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | || || || || || || || ||||| |||||||| || Sbjct 2987 GTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCCAGGGTAATGGTCTTACCCGTC 3046 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || ||||| Sbjct 3047 AGTGTCTTTACGAAAATTTGCAT 3069 >seq31 Length=904706 Score = 107 bits (118), Expect = 4e-18 Identities = 187/264 (71%), Gaps = 10/264 (4%) Strand=Plus/Plus Query 238591 TATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAA 238650 ||||||| |||| ||| | || | || ||| ||| |||||| ||||| | ||| Sbjct 56406 TATGGAACGCCGCGCAGCTCCAGTTAGTGAGAGAAGGTGGCATGCATGGTTTCATGAGAA 56465 Query 238651 TGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATA-- 238708 |||||||||| |||||||| ||||||||||| || || || || | ||| || | Sbjct 56466 TGTATTGGGCGAAAAAGATTCTTGAATGGACCGAGTCACC--AGAAATCGCTTTGAAAAC 56523 Query 238709 TAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAG- 238767 ||| || | || || | ||||| || ||||| | ||||||||||||| || | Sbjct 56524 GAGTCAATACTTCAATGACAGATACGCGCTTGACGGAAAAGATCCTAACGGATTTGTTGG 56583 Query 238768 -GTTGTATGTGGTCAATATGTGGATTACACGAT-AGGGCATGGTCTGAGAGACCTATATT 238825 |||| ||| || | ||| | ||| |||||| | ||| ||| || |||||| | || Sbjct 56584 AGTTGGATGGAGT-ATCATGGGCATT-CACGATCAAGGC-TGGCAAGAAAGACCTGTCTT 56640 Query 238826 TGGAAAAGTTAGATACATGAATTA 238849 ||| || |||||||||||||||| Sbjct 56641 TGGCAAGATTAGATACATGAATTA 56664 >seq226 Length=603765 Score = 105 bits (116), Expect = 2e-17 Identities = 207/299 (69%), Gaps = 14/299 (5%) Strand=Plus/Minus Query 238558 AACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGG 238617 || |||||||| || | || |||||| || |||||| | || ||| | || ||| Sbjct 209400 AAGAGCTCGAGCAAGGAAAGACACACGATGAACTTTGGAATGCGGCGCAGCTCCAGTTGG 209341 Query 238618 TAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAAT 238677 | ||| ||| |||||| ||||| | ||||||| ||||| |||||||| ||||||| Sbjct 209340 TGAGAGAAGGTGGCATGCATGGTTTCATGAGAATGTACTGGGCGAAAAAGATTCTTGAAT 209281 Query 238678 GGACTAGATCTCCAAAGGAA---GCTCTTAGATATAGTATTTATCTGAACGATAAATACG 238734 ||||| || || |||| ||| | | | ||| || | || || | ||| | Sbjct 209280 GGACTGAGTCACC---GGAAATTGCTTTAAAAACGAGTCAATACTTCAATGACAGATATG 209224 Query 238735 AACTCGACGGTACGGATCCTAACGGATACGTAG--GTTGTATGTGGTCAATATGTGGATT 238792 || ||||| | ||||||||||||| ||| | |||| || || | ||| | ||| Sbjct 209223 CGCTTGACGGAAAAGATCCTAACGGATTCGTTGGAGTTGGCTGGAGT-ATCATGGGTATT 209165 Query 238793 ACACGAT--AGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTA 238849 |||||| |||| ||| || ||||| | ||||||||| | |||||||||||||| Sbjct 209164 -CACGATCAAGGG--TGGCAAGAAAGACCAGTTTTTGGAAAAATCAGATACATGAATTA 209109 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| | || | ||||| || || || ||||| Sbjct 85656 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCCTCGAGCTGCTTTCCG 85715 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||||||| || |||||||| || ||||| ||||| | || Sbjct 85716 GCAAAGATCAAACGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTG 85775 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || || || ||||| || || | || Sbjct 85776 ACGTTGTCGATGGTGTCAGAGGGCTCAACATCGAGGGTGATGGTCTTTCCGGTCAAAGTC 85835 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 85836 TTGACGAAAATCTGCAT 85852 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| | || | ||||| || || || ||||| Sbjct 85884 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCCTCGAGCTGCTTTCCG 85943 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||||||| || |||||||| || ||||| ||||| | || Sbjct 85944 GCAAAGATCAAACGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTG 86003 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || || || ||||| || || | || Sbjct 86004 ACGTTGTCGATGGTGTCAGAGGGCTCAACATCGAGGGTGATGGTCTTTCCGGTCAAAGTC 86063 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 86064 TTGACGAAAATCTGCAT 86080 >seq98 Length=427084 Score = 91.5 bits (100), Expect = 3e-13 Identities = 364/559 (65%), Gaps = 23/559 (4%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 ||||||||| | |||| ||||| |||||||| | |||||| | ||||| | ||| Sbjct 135581 ATGTACAAAAAAGCCGAAGCTTCCTTTTGGACGGCCGAAGAAATTGATCTCGCCAGTGAT 135522 Query 268802 TTAATAGATTGGAAAAATTTAAA-ACCAGAAGAAAGAAGATTTATATCTTATATTCTTGC 268860 || |||||||||| |||| | || | ||| | ||| | || | | | || Sbjct 135521 TTGCAAGATTGGAAACATTTGTCGAGCA-ACGAACGTCACTTTGTGTCGCACGTGTTGGC 135463 Query 268861 GTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGA 268920 ||| ||||| | || || || || || |||||| | | | | || || ||| || Sbjct 135462 GTTCTTTGCCGCGTCCGACGGCATTGTGAATGAAAATTTGGCACAAAACTTTTGTACCGA 135403 Query 268921 GGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCA 268980 | || || |||||| | ||||||||||||||||| || || | ||||| ||||| Sbjct 135402 AATTCAATCGCCGGAAGCCCGTTGTTTTTACGGATTCCAAATTGCCGTCGAAAACATTCA 135343 Query 268981 TTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG 269040 || | || ||| || || ||||| || || ||| ||||| || ||| Sbjct 135342 CAGCGAAACCTATTCTCTTTTGATTGATACGTACATTCGCGATC----CGAAA-GAGAAG 135288 Query 269041 ACTATTTTCTT-----CTATGAGAACTATGGA-CTGTGTG-AGaaaaaaaT-CTGAATGG 269092 | ||| || | || || || || | ||||| | |||| || | | ||| Sbjct 135287 GATCATTTGTTGCGGGCCATT-GA--TACGGTTCCGTGTGTACAAAAGAAGGCCCATTGG 135231 Query 269093 GCTCTGAAATGGATAAACG---ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCC 269149 || || ||||| ||| | | ||| | | | ||| | | || || ||||| Sbjct 135230 GCCTTGCAATGGTGTGACGCGAACAACGCTTCCTTTGCGGAACGCTGTGTCGCCTTTGCG 135171 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 || || ||||| || |||||||| || || ||| || || |||||| | |||||| | Sbjct 135170 GCCGTCGAAGGCATTTTCTTTTCCGGTTCCTTTTGTGCCATTTTTTGGCTCAAGAAACGG 135111 Query 269210 GGCCTTATGCCAGGA-TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || || ||||| || || |||| || ||||||||||| || | ||||||||| | || Sbjct 135110 GGTCTCATGCCCGGTCTTTGCTTT-TCCAACGAATTGATTAGTCGCGACGAAGGTCTGCA 135052 Query 269269 CTGCGACTTCGCTTGTTTA 269287 || || || || ||| || Sbjct 135051 TTGTGATTTTGCCTGTCTA 135033 >seq208 Length=180812 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188 ||| |||| || || ||||| || || ||||| || ||||||||||| ||||| || Sbjct 72902 GAACGGTTGGTGGCCTTTGCGGCCGTGGAAGGGATCTTCTTTTCGGGAGCTTTTTGTGCC 72961 Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 ||||||||| | |||||| |||| || ||||| || || || || ||| ||| | || Sbjct 72962 ATCTTTTGGCTCAAGAAACGAGGGCTGATGCCCGGTTTGACGTTTAGTAATGAACTCATT 73021 Query 269249 AGCAGGGACGAAGGTTTACACTG 269271 || | || ||||| | ||||| Sbjct 73022 AGTCGCGATGAAGGACTGCACTG 73044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394048073860