Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq61 120 2e-22 seq128 114 9e-21 >seq61 Length=553271 Score = 120 bits (132), Expect = 2e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 25374 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCT 25433 || ||| | || ||||||| || | ||||| | |||||| || |||| | || Sbjct 19105 TTGATCTTGAGCTTGGGAAACGGCCGAGGCTCGCGCTCGAGTTGCTCTTTCAAAGCATCC 19046 Query 25434 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGC 25493 || |||| || |||| || || || || | ||| |||||||||||||||| | | Sbjct 19045 ACATGATTCAAATAGATATGCGCATCGCCAATGACGTGAACAAACTCTCCCGGTTTTCGT 18986 Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553 || ||||||| ||| ||||||| ||| | |||| |||||| || ||||| || || || Sbjct 18985 CCCGTAACGTGAGCGATCATGTGCGTCAAGAGAGCGTAGCTCGCAATGTTGAACGGAACT 18926 Query 25554 CCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 25601 || | |||||||||| | | | | ||| || | |||||||||||| || Sbjct 18925 CCAAGCCCCATGTCCGCACTA-CGCTGATACAACTGACACGAGAGTTC 18879 Score = 84.2 bits (92), Expect = 1e-11 Identities = 214/326 (66%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 25609 CTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTA 25668 || || ||||||||||| | | | |||||||| | || |||| |||||| || Sbjct 18804 CTTACATAAAACTGACAAAACATATGACACGGAGGCAACGCCATAATCGGCAAGTCCTTG 18745 Query 25669 GGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCG 25728 || |||||||| || | |||| | |||||| || | | | | || ||| | Sbjct 18744 GGATTCCAGGCCGTCAACACAATGCGTCGGTCTTCGGGATGATTCTTAATTTTATCGATG 18685 Query 25729 GTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 25788 || ||||||||| | ||| || | ||| || | ||| || |||||| Sbjct 18684 CAGTCCGCCAGCTGATCGATGCCCTGTCCGGTGTAATCGGTATGCATATCTTGGTACTCG 18625 Query 25789 GCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGC 25848 ||||| || | | ||||||||| |||||||| ||||| ||||| ||| ||| | || Sbjct 18624 GCTCCAAAGTGACGCCACTGGAAACCGTACACGGGTCCGAGGTCCCCAACTTGTCGATGT 18565 Query 25849 TCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCC 25908 | || ||| || ||| | || || | ||||||||| | ||||| || | | | | Sbjct 18564 TTCAATCCCAACTGATCGAGGAACTCCCGCGAACCATTGCCATCCCAAATGTGAATCTTC 18505 Query 25909 TTCTCGGAGAGCTCTTTGGAGTTTGT 25934 || ||| ||| || |||| ||| || Sbjct 18504 TTGGCGGCGAGATCATTGGCGTTCGT 18479 >seq128 Length=686783 Score = 114 bits (126), Expect = 9e-21 Identities = 163/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 25374 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCT 25433 || ||| | || ||||||| |||| ||||| | |||||| || ||| | | || Sbjct 551764 TTGATCTTGAGCTTGGGAAACGGTCGAGGCTCACGCTCGAGTTGCTCCTTTAAGGCATCC 551823 Query 25434 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGC 25493 || |||| || |||| ||| || || || | ||| |||||||||||||| | | | Sbjct 551824 ACATGATTCAAATAGATGTGCGCATCGCCAATGACGTGAACAAACTCTCCCGGCTTTCGT 551883 Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553 || || || | ||| ||||||| ||| | |||| |||||| || ||||| || ||||| Sbjct 551884 CCCGTGACTTGAGCAATCATGTGCGTCAAGAGAGCGTAGCTCGCAATGTTGAACGGTACT 551943 Query 25554 CCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 25601 |||| ||||||||| | | | ||| || | |||||||||||| || Sbjct 551944 CCGAGTCCCATGTCCGCAC-TGCGCTGATACAACTGACACGAGAGTTC 551990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340136377099035