Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq226 96.9 3e-15 seq41 89.7 4e-13 seq232 86.0 5e-12 seq82 86.0 5e-12 >seq226 Length=603765 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||||| || ||||| || |||||| || |||||||| || Sbjct 85853 ACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 85912 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||| |||||||| ||| | | || |||||||| ||||| ||| Sbjct 85913 CAACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCAGGCGG 85972 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||||||| || || ||||| | | || ||||| || | | ||| Sbjct 85973 AATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG--ATGGTGTCAGAGGGCTCA 86030 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || ||||| || ||||| | ||| || || |||||||||||| Sbjct 86031 ACATCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATC 86081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || ||||| || |||||| || |||||||| || ||| || ||||| Sbjct 85641 AACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCC 85700 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| | | || |||||||| ||||| ||| | | |||||||||| Sbjct 85701 TCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCAGGCGGAATTCCTTCCTTGTCC 85760 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || ||||| | | || ||||| || | | ||| |||| || |||| Sbjct 85761 TGGATCTTGGTCTTGACGTTGTCG--ATGGTGTCAGAGGGCTCAACATCGAGGGTGATGG 85818 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| | ||| || || ||||||||||| Sbjct 85819 TCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 85852 >seq41 Length=265118 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || |||||||| | || || | ||| | || || ||||||||||| |||||||| | Sbjct 262726 CCACCGCGCAATCGCAAAACGAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTC 262785 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||||| |||||| ||| | |||| | ||| ||||| ||| ||| Sbjct 262786 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGCGGA 262845 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||||||||| ||| || ||||| | | || || || | | ||| Sbjct 262846 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGACA 262905 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| ||||| | ||||| || |||||||| || Sbjct 262906 TCGAGCGTAATAGTTTTGCCGGTCAAGGTTTTGACGAAAATCTGAAT 262952 >seq232 Length=134552 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| |||||||| | | || | ||| | ||||| ||||||||||| |||||||| || Sbjct 133042 ACCACCGCGCAATCGCAGAACAAGATGCAAAGTGCTTTCCTTTTGAATATTGTAATC-GC 133100 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | || |||| |||||||||| | |||| | ||| ||||| ||| | Sbjct 133101 TTAAAGTGCGTCCATCTTCCAACTGCTTACCGGCAAAAATGAGACGTTGCTGGTCCGGAG 133160 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || ||||||||| ||||| ||||| | | || || || | | ||| Sbjct 133161 GAATACCTTCCTTGTCTTGGATTTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGA 133220 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || ||||| ||||| | |||||| || |||||||| || Sbjct 133221 CGTCAAGCGTAATAGTTTTTCCGGTCAAAGTTTTGACGAAAATCTGAAT 133269 >seq82 Length=265081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || |||||||| | || || | ||| | || || ||||||||||| |||||||| | Sbjct 263006 CCACCGCGCAATCGCAAGACAAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTC 263065 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||||| |||||| ||| | |||| | ||| ||||| ||| || Sbjct 263066 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGAGGA 263125 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||||||||| ||| || ||||| | | || || || | | ||| Sbjct 263126 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTATCAATCGTGTCCGACGGCTCGACA 263185 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| || || | ||||| ||||||||||| || Sbjct 263186 TCGAGCGTAATAGTTTTTCCAGTCAAGGTTTTGACAAAAATCTGAAT 263232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249685470295