Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq241 118 1e-21 seq49 98.7 1e-15 >seq241 Length=755706 Score = 118 bits (130), Expect = 1e-21 Identities = 238/348 (68%), Gaps = 20/348 (6%) Strand=Plus/Plus Query 164611 GTTAATGGTCCTGAATTATTGAACAAATATGTAGGTG--AGTCAGAAGCTAATGTTAGAA 164668 || || ||||| ||| | | ||||||| |||||||| ||| |||| || | ||| Sbjct 312318 GTGAACGGTCCCGAAGTCCTTAACAAATTTGTAGGTGGCAGT--GAAGAGAAAATCAGAG 312375 Query 164669 AGTTGTTTCAGGAGGCTGAAGAAGAACAAAA-GAAAGCAGGTTTAGCTA-GTAAATTACA 164726 | | ||| ||| || ||| ||||||| || |||| || | | | ||| || || Sbjct 312376 AACTCTTTGTGGAAGCAGAAAAAGAACAGAACGAAAT--GGGAGACCAAAGTATGTTGCA 312433 Query 164727 TGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT----AATAT-- 164780 | |||| || | ||||| || |||||| ||||||| |||||||| || || Sbjct 312434 TATTATCATTATGGATGAAATGGATGCTATTTGCAAGCAACGTGGTACAGTCAAAGATGG 312493 Query 164781 ------TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATC 164834 | | ||| | || || ||||||||||| || ||||| |||||||| || || Sbjct 312494 AACCGGTGTCTCCGATTCCGTTGTGAATCAGTTGCTGTCCAAAATTGATGGTGTCGATTC 312553 Query 164835 CTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTT 164894 | | || || ||||| | | ||||||||||||||| ||| | ||||||||||| || Sbjct 312554 CCTCAACAACATTTTGTTGATTGGTATGACCAACCGAAAAGATATGATTGATGATGCCTT 312613 Query 164895 ATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGA 164942 | ||||| ||||| || ||| | | | ||||| || || ||||| Sbjct 312614 GCTCCGACCGGGTCGTTTGGAAGTCCACGTGGAAATTGGCTTGCCCGA 312661 >seq49 Length=323496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 164788 GATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATT 164847 ||| | || || ||||||||||| || ||||| |||||||| || ||| | || || ||| Sbjct 71835 GATTCTGTTGTGAATCAGTTGCTGTCCAAAATTGATGGTGTCGATTCCCTCAACAACATT 71894 Query 164848 TTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGT 164907 | | | ||||||||||| ||| ||| | ||||||||||| || | ||||| ||| Sbjct 71895 CTCTTGATTGGTATGACCAATCGAAAGGATATGATTGATGATGCGTTGCTCCGACCCGGT 71954 Query 164908 CGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATT 164964 || || ||| | | |||| || || || ||||| | |||||| | |||||| Sbjct 71955 CGTTTGGAAGTCCACGTAGAGATTGGTTTGCCCGATCTGCAGGGACGCTTGCAAATT 72011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869802722000