Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq133 176 7e-40 seq63 158 2e-34 seq43 104 4e-18 >seq133 Length=457752 Score = 176 bits (194), Expect = 7e-40 Identities = 206/277 (74%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||| ||||||||||| || || |||||||| || || Sbjct 352908 CGCCAAGCGTCACCGAAAGGTTCTTCGCGATAACATCCAGGGTATTACCAAGCCCGCCAT 352849 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| || |||||| ||||||| | |||| ||||||| Sbjct 352848 CCGCCGTCTCGCTCGTCGTGGTGGTGTGAAGCGTATCTCTGGTCTCATCTACGAAGAGAC 352789 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| |||| | ||| ||| |||| ||| | || ||| ||||| Sbjct 352788 TCGTGGTGTTCTCAAGGTCTTTTTGGAGAACGTGATCCGCGATAGTGTCACCTACACCGA 352729 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||||||||| || ||||||| | || || || |||| ||||| || Sbjct 352728 ACACGCCCGCCGTAAGACTGTTACGGCCATGGACGTTGTTTACGCCCTGAAGCGTCAGGG 352669 Query 16672 CCGTAAGA---TTTATGGTTTTGGAAGTTAATCTTCT 16705 | |||| | || ||||| ||| ||||| | ||| Sbjct 352668 C---AAGACCTTGTACGGTTTCGGAGGTTAAGCGTCT 352635 Score = 176 bits (194), Expect = 7e-40 Identities = 206/277 (74%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||| ||||||||||| || || |||||||| || || Sbjct 357225 CGCCAAGCGTCACCGAAAGGTTCTTCGCGATAACATCCAGGGTATTACCAAGCCCGCCAT 357284 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| || |||||| ||||||| | |||| ||||||| Sbjct 357285 CCGCCGTCTCGCTCGTCGTGGTGGTGTGAAGCGTATCTCTGGTCTCATCTACGAAGAGAC 357344 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| |||| | ||| ||| |||| ||| | || ||| ||||| Sbjct 357345 TCGTGGTGTTCTCAAGGTCTTTTTGGAGAACGTGATCCGCGATAGTGTCACCTACACCGA 357404 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| |||||||||||||| ||||||| | || || || | || ||||| || Sbjct 357405 ACACGCCCGCCGTAAGACTGTCACGGCCATGGACGTTGTTTACGCCCTCAAGCGTCAGGG 357464 Query 16672 CCGTAAGA---TTTATGGTTTTGGAAGTTAATCTTCT 16705 | |||| | || ||||| ||| ||||| | ||| Sbjct 357465 C---AAGACCTTGTACGGTTTCGGAGGTTAAGCGTCT 357498 >seq63 Length=850204 Score = 158 bits (174), Expect = 2e-34 Identities = 202/277 (73%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||| ||||||||||| || || |||||||| || || Sbjct 370621 CGCCAAGCGTCACCGAAAGGTTCTTCGCGATAACATCCAGGGTATTACCAAGCCCGCCAT 370680 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| || |||||| ||||||| | | || ||||||| Sbjct 370681 CCGCCGTCTCGCTCGTCGTGGTGGTGTGAAGCGTATCTCTGGTCTCATTTACGAAGAGAC 370740 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| |||| | ||| ||| |||| ||| | || ||| ||||| Sbjct 370741 TCGTGGTGTTCTCAAGGTCTTTTTGGAGAACGTGATCCGCGATAGTGTCACCTACACCGA 370800 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||| || ||||||| | || || || | || ||||| | Sbjct 370801 ACACGCCCGCCGCAAGACTGTTACGGCCATGGACGTTGTTTACGCCCTCAAGCGTCAGG- 370859 Query 16672 CCGTAAGA---TTTATGGTTTTGGAAGTTAATCTTCT 16705 | |||| | || ||||| ||| ||||| | ||| Sbjct 370860 --GAAAGACCTTGTACGGTTTCGGAGGTTAAGCGTCT 370894 >seq43 Length=376587 Score = 104 bits (114), Expect = 4e-18 Identities = 187/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | | ||||| ||||| ||||| || || ||||| || || || Sbjct 84465 CGCCAAGCGCCATCGTAAAGTACTTCGCGATAATATCCAGGGTATTACCAAACCCGCCAT 84406 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || || || ||||| || || || | || ||||| | || ||||||| Sbjct 84405 TCGTCGTCTCGCGCGGCGGGGTGGCGTGAAACGCATTTCGGGATTCATTTACGAAGAGAC 84346 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || | ||| | || | || | || ||| || || Sbjct 84345 GCGCGGCGTCTTGAAAGTTTTTTTGGAGAATCTGATTCGCGACAGTGTCATCTACACGGA 84286 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||| ||||| |||||||| |||| |||| ||||||||||||| Sbjct 84285 TCACGCCCGTCGCATGACCGTCACGGCCATGGATGTCGTGCATGCCCTGAAACGTCAAGG 84226 Query 16672 CCGTAAGA---TTTATGGTTTTGGAAGTTAAT 16700 | |||| | || || |||||| | |||| Sbjct 84225 C---AAGACCTTGTACGGGTTTGGAGGCTAAT 84197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074930279435