Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq120 100 3e-16 seq82 100 3e-16 seq41 100 3e-16 seq142 95.1 1e-14 seq2 95.1 1e-14 seq232 89.7 6e-13 seq67 89.7 6e-13 >seq120 Length=609189 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || || || || || |||||||| | ||| || || | || || Sbjct 561992 ACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAATCGGACAGTGTTCGACCATCTTCC 561933 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||| || || ||||| || || ||||| || || | || | | |||||||||| | Sbjct 561932 AACTGTTTTCCGGCGAAAATCAGACGCTGTTGATCCGGAGGAATTCCCTCCTTGTCCTGG 561873 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| | | | ||||| || || ||||||| ||||||||| || Sbjct 561872 ATCTTGGTCTTGACATTATCGATAGTGTCAGACGGCTCGACATCGAGCGTGATGGTCTTA 561813 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||| | |||||||| |||||||||||| Sbjct 561812 CCCGTCAAGGTCTTTACGAAGATTTGCATT 561783 >seq82 Length=265081 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || ||||| || | |||||| || || |||||||||||||||||||| || ||| || Sbjct 263015 AATCGCAAGACAAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTCAAAGTGCGT 263074 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || | |||||| || || || ||||| || |||||||| | || | | ||| Sbjct 263075 CCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGAGGAATACCTTCC 263134 Query 42111 TTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 |||| | ||| | || || |||| | | | |||||| || || ||||||| ||| Sbjct 263135 TTGT-CTTGAATCTTGGTCTTGACATTATCAATCGTGTCCGACGGCTCGACATCGAGCGT 263193 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || | || || ||||| || || || Sbjct 263194 AATAGTTTTTCCAGTCAAGGTTTTGACAAAAATCTGAAT 263232 >seq41 Length=265118 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || ||||| || | |||||| || || |||||||||||||||||||| || ||| || Sbjct 262735 AATCGCAAAACGAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTCAAAGTGCGT 262794 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || | |||||| || || || ||||| || |||||||| | || | | ||| Sbjct 262795 CCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGCGGAATACCTTCC 262854 Query 42111 TTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 |||| | ||| | || || |||| | | | |||||| || || ||||||| ||| Sbjct 262855 TTGT-CTTGAATCTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGACATCGAGCGT 262913 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || | || || || || || || || Sbjct 262914 AATAGTTTTGCCGGTCAAGGTTTTGACGAAAATCTGAAT 262952 >seq142 Length=241092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | |||||| ||||| ||||| ||| || |||||||||||||||||| Sbjct 170316 ACCACCTCGGAGACGCAAAACCAAGTGCAAGGTGGATTCTTTTTGAATATTGTAATCACT 170375 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || | || ||||| ||||| || | ||| || || || | || Sbjct 170376 CAAAGTACGTCCATCTTCCAATTGTTTACCGGCGAAAATCAATCGTTGTTGATCCGGGGG 170435 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| ||| || |||| ||| | | | ||| || | || | Sbjct 170436 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTATCCGAAGGCTCAA 170494 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || ||||| || ||||| || |||||||| || |||||||| Sbjct 170495 CGTCCAGGGTAATGGTCTTACCCGTCAGTGTCTTTACGAAAATTTGCAT 170543 >seq2 Length=622807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || || || ||||| ||||| || | ||| || || | || || Sbjct 352866 ACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGACAGTGTTCGACCATCTTCC 352925 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||| || || ||||| || | ||||| || || | || | | |||||||||| | Sbjct 352926 AACTGTTTTCCGGCGAAAATCAAACGCTGTTGATCCGGAGGAATTCCCTCCTTGTCCTGG 352985 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| | | | ||||| || || ||||||| ||||||||| || Sbjct 352986 ATCTTGGTCTTGACATTATCGATAGTGTCAGACGGCTCGACATCGAGCGTGATGGTCTTA 353045 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||| | |||||||| |||||||||||| Sbjct 353046 CCCGTCAAGGTCTTTACGAAGATTTGCATT 353075 >seq232 Length=134552 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | || |||| || | |||||| ||||| |||||||||||||||||||| Sbjct 133041 GACCACCGCGCAATCGCAGAACAAGATGCAAAGTGCTTTCCTTTTGAATATTGTAATCGC 133100 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 | ||| || | || || | ||||||||| || || ||||| || |||||||| | | Sbjct 133101 TTAAAGTGCGTCCATCTTCCAACTGCTTACCGGCAAAAATGAGACGTTGCTGGTCCGGAG 133160 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | | |||||||| |||||| |||| | | | |||||| || || | Sbjct 133161 GAATACCTTCCTTGTCTTGGATTTTGGTCTTGACATTATCGATCGTGTCCGACGGCTCGA 133220 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||| || ||||| || || | || || || || || || || Sbjct 133221 CGTCAAGCGTAATAGTTTTTCCGGTCAAAGTTTTGACGAAAATCTGAAT 133269 >seq67 Length=439500 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | |||||| ||||| ||||| || || || ||||||||||||||| | Sbjct 2843 CCACCTCGAAGACGCAAAACCAAGTGCAAGGTAGATTCTTTCTGAATATTGTAATCACTC 2902 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || | || ||||| ||||| || | ||| || || || | || Sbjct 2903 AACGTACGTCCATCTTCCAATTGTTTACCGGCGAAAATCAATCGTTGTTGATCCGGGGGA 2962 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 2963 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACGGCTCAAC 3021 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| || ||||| || |||||||| || |||||||| Sbjct 3022 GTCCAGGGTAATGGTCTTACCCGTCAGTGTCTTTACGAAAATTTGCAT 3069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210796902800