Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10 131 3e-25 seq168 123 4e-23 seq2 111 3e-19 seq120 96.9 6e-15 seq98 93.3 7e-14 >seq10 Length=152390 Score = 131 bits (144), Expect = 3e-25 Identities = 302/447 (68%), Gaps = 6/447 (1%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 || ||||||||| |||||||| | || |||| ||| |||| | |||||| | || Sbjct 134772 CAAATAGTACATTCCGGTCTTCAATCCTTTCTTCCATGCGTAAAAGTGCATACTGGTCAA 134713 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 || || || ||| ||||||| ||| | |||| ||||||||| ||| ||| |||| Sbjct 134712 CTTCTTCGAGTCGGGTTCGGCCAAGTGCACATTCAAAGACTGGCTCTGGCAAATGTAAGG 134653 Query 204004 CGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 || || || || ||||| | | ||||| ||| | |||||||||||| |||||| | Sbjct 134652 AGCGCGTTCGGCCGCCATGTCCAAAATGGAACGCTGAGGAATCTCCCACACTGTCTTGTA 134593 Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCA 204122 ||| || | || | || | | || |||| || || || ||||||||||| | Sbjct 134592 CACTTCCCGAATGGACTCGGGGATAGATT-TGACGTTTTGAATAGATCCGTTGTCGGCAA 134534 Query 204123 TCAGTCTCATCCTCGTCTCCTCCCCCCACATGCC-CAACCTGATCAGCTCCCGCACCAGG 204181 | | | | | || || ||||| || | | | | | ||| || | || | Sbjct 134533 TGATACGGTTGCGAACATCTTCATTCCACAAACCACGGGCAG-TTAACTCTCGAAGCAAG 134475 Query 204182 TGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTG 204241 || ||||| || | ||| ||||||| | || | ||| || ||| |||| ||||| Sbjct 134474 TGTTTGTTGACGACCGTAAACTCTCCGGCTAAAACGCGACGGTTGTACATGTTGCTGGTG 134415 Query 204242 AATGGTTCGAACGC-CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGG 204300 || ||||| | || ||||||||| || | |||||| ||||| ||||||||||| || Sbjct 134414 AACGGTTC-AGTGCTCTCGTTGTTACCAAGAATCTGTGCGGTAGACGCCGTGGGCATAGG 134356 Query 204301 AGCCAGGAGCAGGGAGTTGCGCACACC 204327 ||| || | || ||||| || | ||| Sbjct 134355 AGCTAGCAACAACGAGTTTCGGAGACC 134329 >seq168 Length=39825 Score = 123 bits (136), Expect = 4e-23 Identities = 332/497 (67%), Gaps = 13/497 (3%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTAC 203893 ||||| || |||||||||| || |||| |||| || | | | || ||||||| Sbjct 30431 TCTTGATCGACCGTGAACTTGATAGCGT---CGGCCTTGGGACGAGTGCGCAAATAGTAC 30375 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 || || ||||| | || |||| ||| |||| | |||||| | || ||| | | Sbjct 30374 ATACCCGTCTTCAATCCTTTCTTCCATGCGTAAAAGTGCATACTGGTCAATTTCTTGGAG 30315 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCT 204013 | ||| ||||||| ||| | |||| |||||| || ||| ||| |||| || || || Sbjct 30314 TCGGGTTCGGCCAAGTGCACATTCAAAGACTGACTCTGGCAAATGTAAGGAGCGCGTTCG 30255 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 || ||||||| | ||||| ||| | |||||||||||| || ||| |||| || | Sbjct 30254 GCCGCCATATCTAAAATGGAACGCTGAGGAATCTCCCACACGGTTTTGTACACATCCCGA 30195 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 || | || | | || |||| || || || ||||||||||| || | | | Sbjct 30194 ATGGACTCCGGGATAGATT-TGACGTTTTGAATAGATCCGTTGTCGGCGATAATACGATT 30136 Query 204133 CCTCGTCTCCTCCCCCCACATGCC-CAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | || || ||||| || | | | | | ||| || | || ||| ||||| Sbjct 30135 GCGAACATCTTCATTCCACAAACCACGGGCAG-TTAACTCTCGAAGCAAGTGTTTGTTGA 30077 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 || | ||| ||||||| || || | ||| || ||| |||| ||||||| ||||| | Sbjct 30076 CGACCGTAAACTCTCCGGCCAAAACGCGACGGTTGTACATGTTGCTGGTGAACGGTTC-A 30018 Query 204252 ACGC-CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || ||||||||| || | |||||| || || ||||||||||| || || || ||| Sbjct 30017 GTGCTCTCGTTGTTACCAAGAATCTGTGCTGTAGACGCCGTGGGCATAGGGGCTAGCAGC 29958 Query 204311 AGGGAGTTGCGCACACC 204327 | ||||| || | ||| Sbjct 29957 AACGAGTTTCGGAGACC 29941 >seq2 Length=622807 Score = 111 bits (122), Expect = 3e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 || ||||||||| | |||||||||||||| || || | ||| || |||||||| || Sbjct 348274 TTCTCCACCGTGTATTGAATGGCGTTCACTGCTGGTTTCGTTCGTAGGTAGTACATCCCT 348333 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||||| || |||| |||| |||| | ||||| | || || ||| || | || Sbjct 348334 GTCTTTAATCCTTTCTTCCACGCGTAAAAATGCATAGCAGTTAGCTTGTCAACCGTAGGA 348393 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCC 204019 || || ||| || || |||||||| || ||||| ||||| ||||||| || ||| Sbjct 348394 TCAGCGATGAAAAGATTGAGAGACTGACTCTGGTCAATGAATTTGCCCCGATCAGCAGCC 348453 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 || | || ||| ||| | || |||||||| |||||| ||| Sbjct 348454 ATGTCAATGATGTCTTTCATCTTGATTTCCCACACTGTCTTGTACA 348499 >seq120 Length=609189 Score = 96.9 bits (106), Expect = 6e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 || ||||| ||| | |||||||||||||| || || | ||| || |||||||| || Sbjct 566518 TTCTCCACAGTGTATTGAATGGCGTTCACTGCTGGTTTCGTTCGTAGGTAGTACATCCCT 566459 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||| | || |||| |||| | || | ||||| | || || ||| || | || Sbjct 566458 GTCTTCAATCCTTTCTTCCACGCATAGAAATGCATAGCAGTTAGCTTGTCAACCGTAGGA 566399 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCC 204019 || || ||| || || |||||||| || ||||| ||||| ||||||| || ||| Sbjct 566398 TCAGCGATGAAAAGATTGAGAGACTGACTCTGGTCAATGAATTTGCCCCGATCAGCAGCC 566339 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || | || ||| |||| | || |||||||| ||||| Sbjct 566338 ATGTCAATGATGTCCTTCATCTTGATTTCCCACACTGTCTT 566298 >seq98 Length=427084 Score = 93.3 bits (102), Expect = 7e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| || || ||||| || || ||||| || ||||| ||| || || |||||||| | Sbjct 135029 ACAGTAGACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTAATCAATTCGTTGGAAA 135088 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | || || ||||||| || || ||||||||||||||||| ||| | |||| Sbjct 135089 AGCAAAGACCGGGCATGAGACCCCGTTTCTTGAGCCAAAAAATGGCACAAAAGGAACCGG 135148 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCAC-GAGCCTCTCACCAAAAGAGGCGTTG 160093 ||| || || || || ||||||||||| || || ||| | || |||| || |||||| Sbjct 135149 AAAAGAAAATGCCTTCGACGGCCGCAAAGGCGACACAGCGT-TCCGCAAAGGAAGCGTTG 135207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152267865200