Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq128 143 2e-29 seq61 134 1e-26 >seq128 Length=686783 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29811 || ||| | || ||||||| |||| ||||| | |||||| || ||| | | ||| Sbjct 551764 TTGATCTTGAGCTTGGGAAACGGTCGAGGCTCACGCTCGAGTTGCTCCTTTAAGGCATCC 551823 Query 29812 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29871 || |||| || |||| ||| || || || | | ||| |||||||||||||| | | | Sbjct 551824 ACATGATTCAAATAGATGTGCGCATCGCCAATGACGTGAACAAACTCTCCCGGCTTTCGT 551883 Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 || ||||| ||||| ||||||| ||| | ||||| |||||| || ||||| || ||||| Sbjct 551884 CCCGTGACTTGAGCAATCATGTGCGTCAAGAGAGCGTAGCTCGCAATGTTGAACGGTACT 551943 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 29978 ||||| ||||||||| | | ||| || | |||||||||||| || Sbjct 551944 CCGAGTCCCATGTCCGCACTGCGCTGATACAACTGACACGAGAGTTC 551990 Score = 102 bits (112), Expect = 7e-17 Identities = 260/393 (66%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 29986 CTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30045 || || ||||||||||| | | || |||||||| | ||||| | |||||| ||| Sbjct 552067 CTTACATAAAACTGACAAAACATATGACACGGAGGCAACGCCATAATCGGCAAGTCCTTG 552126 Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105 || |||||||| || || ||||||| ||||| || | ||| | || || | | Sbjct 552127 GGATTCCAGGCCGTCAAGACAATGCGCCGATCTTCGGGATGATTCTTAATTTTATCGATG 552186 Query 30106 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30165 | |||||| || | ||| || | ||| || || ||| || ||||||| Sbjct 552187 CAATCCGCCAGCTGGTCGATGCCCTGTCCGGTGTAATCGGCGTGCATATCTTTGTACTCG 552246 Query 30166 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30225 ||||| || || | ||||||||| |||||||| ||||| ||||| || ||| | ||| Sbjct 552247 GCTCCAAAGTGACGCCACTGGAAGCCGTACACGGGTCCAAGGTCCCCGACTTGTCGATGC 552306 Query 30226 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30285 || ||| || || | ||| || | ||||| ||| | |||||||| | | | Sbjct 552307 GTCAATCCCAACTGATCGAGAAACTCGCGCGAACCATTGCCATCCCAGATGTGAATATTC 552366 Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG-ACGAACCACAGCAGCTCCTCCAC 30344 || ||| ||| || || | ||| || || ||| | |||||||| || || || | Sbjct 552367 TTGGCGGCGAGATCATTCGCGTTCGTATTGCC-CTGAATGAACCACAACAATTCTTCGGC 552425 Query 30345 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 |||| | |||| || | ||||| ||||| Sbjct 552426 GACGCCTCTCCAGAACGTGCGTTTGGTGGTGAG 552458 >seq61 Length=553271 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29811 || ||| | || ||||||| || | ||||| | |||||| || |||| | ||| Sbjct 19105 TTGATCTTGAGCTTGGGAAACGGCCGAGGCTCGCGCTCGAGTTGCTCTTTCAAAGCATCC 19046 Query 29812 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29871 || |||| || |||| || || || || | | ||| |||||||||||||||| | | Sbjct 19045 ACATGATTCAAATAGATATGCGCATCGCCAATGACGTGAACAAACTCTCCCGGTTTTCGT 18986 Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 || || |||||||| ||||||| ||| | ||||| |||||| || ||||| || || || Sbjct 18985 CCCGTAACGTGAGCGATCATGTGCGTCAAGAGAGCGTAGCTCGCAATGTTGAACGGAACT 18926 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 29978 || |||||||||||| | | ||| || | |||||||||||| || Sbjct 18925 CCAAGCCCCATGTCCGCACTACGCTGATACAACTGACACGAGAGTTC 18879 Score = 96.9 bits (106), Expect = 3e-15 Identities = 269/410 (66%), Gaps = 2/410 (0%) Strand=Plus/Minus Query 29986 CTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30045 || || ||||||||||| | | || |||||||| | ||||| | |||||| ||| Sbjct 18804 CTTACATAAAACTGACAAAACATATGACACGGAGGCAACGCCATAATCGGCAAGTCCTTG 18745 Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105 || |||||||| || | ||||| | |||||| || | ||| | || || | | Sbjct 18744 GGATTCCAGGCCGTCAACACAATGCGTCGGTCTTCGGGATGATTCTTAATTTTATCGATG 18685 Query 30106 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30165 || ||||||||| | ||| || | ||| || | ||| || |||||| Sbjct 18684 CAGTCCGCCAGCTGATCGATGCCCTGTCCGGTGTAATCGGTATGCATATCTTGGTACTCG 18625 Query 30166 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30225 ||||| || || | ||||||||| |||||||| ||||| ||||| || ||| | || Sbjct 18624 GCTCCAAAGTGACGCCACTGGAAACCGTACACGGGTCCGAGGTCCCCAACTTGTCGATGT 18565 Query 30226 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30285 | || ||| || || | || || | ||||| ||| | ||||| || | | | | Sbjct 18564 TTCAATCCCAACTGATCGAGGAACTCCCGCGAACCATTGCCATCCCAAATGTGAATCTTC 18505 Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG-ACGAACCACAGCAGCTCCTCCAC 30344 || ||| ||| || |||| ||| || || ||| | ||||||| || || || | Sbjct 18504 TTGGCGGCGAGATCATTGGCGTTCGTATTTCC-CTGAATAAACCACAACAATTCTTCGGC 18446 Query 30345 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCT 30394 ||| | |||| ||| | ||||| ||||| || || || | |||| Sbjct 18445 CACGCCTCTCCAGAAGGTTCGTTTGGTGGTGAGAAGAGGCAATCGACCCT 18396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616130892035