Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq120 113 3e-20 seq2 113 3e-20 seq232 104 2e-17 seq82 102 5e-17 seq41 102 5e-17 seq226 95.1 8e-15 >seq120 Length=609189 Score = 113 bits (124), Expect = 3e-20 Identities = 175/246 (71%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | ||| || | |||||||| | || ||||| || ||||||||||||| Sbjct 562012 CACCACCACGCAATCGGAGAACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAATCGG 561953 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||| || | || ||||| ||||||||||| ||||||| |||||| ||||| | | Sbjct 561952 ACAGTGTTCGACCATCTTCCAACTGTTTTCCGGCGAAAATCAGACGCTGTTGATCCGGAG 561893 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || || | |||| || | ||||| | || Sbjct 561892 GAATTCCCTCCTTGTCCTGGATCTT-GGTCTTGACATTATCGATAGTGTCAGACGGCTCG 561834 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTG 33759 || || | |||||| || ||||| || || || ||||| ||||| ||||| ||| | || Sbjct 561833 ACATCGAGCGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATTTGCATTATTGATCTG 561774 Query 33760 T-TTAT 33764 | |||| Sbjct 561773 TATTAT 561768 >seq2 Length=622807 Score = 113 bits (124), Expect = 3e-20 Identities = 175/246 (71%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | ||| || | |||||||| | || ||||| || |||||||| |||| Sbjct 352846 CACCACCACGCAATCGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGG 352905 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||| || | || ||||| ||||||||||| |||||||||||||| ||||| | | Sbjct 352906 ACAGTGTTCGACCATCTTCCAACTGTTTTCCGGCGAAAATCAAACGCTGTTGATCCGGAG 352965 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || || | |||| || | ||||| | || Sbjct 352966 GAATTCCCTCCTTGTCCTGGATCTT-GGTCTTGACATTATCGATAGTGTCAGACGGCTCG 353024 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTG 33759 || || | |||||| || ||||| || || || ||||| ||||| ||||| ||| | || Sbjct 353025 ACATCGAGCGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATTTGCATTATTGATCTG 353084 Query 33760 T-TTAT 33764 | |||| Sbjct 353085 TATTAT 353090 >seq232 Length=134552 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| || | || | ||| | |||||| || ||||| || ||||||||| Sbjct 133042 ACCACCGCGCAATCGCAGAACAAGATGCAAAGTGCTTTCCTTTTGAATATTGTAATCGCT 133101 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || ||||| || || ||||||||||| | ||| ||||| || | || Sbjct 133102 TAAAGTGCGTCCATCTTCCAACTGCTTACCGGCAAAAATGAGACGTTGCTGGTCCGGAGG 133161 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| || | |||| || | ||||| | || | Sbjct 133162 AATACCTTCCTTGTCTTGGATTTT-GGTCTTGACATTATCGATCGTGTCCGACGGCTCGA 133220 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| ||| || ||||| || || || ||||| || || ||||| || Sbjct 133221 CGTCAAGCGTAATAGTTTTTCCGGTCAAAGTTTTGACGAAAATCTGAAT 133269 >seq82 Length=265081 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| || || || | ||| | ||| || || ||||| || ||||||||| Sbjct 263006 CCACCGCGCAATCGCAAGACAAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTC 263065 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || ||||| || |||||||||||||| | ||| ||||| || | || Sbjct 263066 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGAGGA 263125 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||| || || | |||| || | ||||| | || || Sbjct 263126 ATACCTTCCTTGTCTTGAATCTT-GGTCTTGACATTATCAATCGTGTCCGACGGCTCGAC 263184 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| || ||||| || || || ||||| ||||| ||||| || Sbjct 263185 ATCGAGCGTAATAGTTTTTCCAGTCAAGGTTTTGACAAAAATCTGAAT 263232 >seq41 Length=265118 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| || || || | ||| | ||| || || ||||| || ||||||||| Sbjct 262726 CCACCGCGCAATCGCAAAACGAGATGCAAAGTACTTTCCTTTTGAATATTGTAATCGCTC 262785 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || ||||| || |||||||||||||| | ||| ||||| || |||| Sbjct 262786 AAAGTGCGTCCATCCTCCAACTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGCGGA 262845 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||| || || | |||| || | ||||| | || || Sbjct 262846 ATACCTTCCTTGTCTTGAATCTT-GGTCTTGACATTATCGATCGTGTCCGACGGCTCGAC 262904 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| || ||||| || || || ||||| || || ||||| || Sbjct 262905 ATCGAGCGTAATAGTTTTGCCGGTCAAGGTTTTGACGAAAATCTGAAT 262952 >seq226 Length=603765 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| |||||||| || ||||| ||| || || |||||||| ||| Sbjct 85626 CCACCGCGGAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 85685 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| || | || ||||||||||| ||||||||||| ||||| |||| Sbjct 85686 AACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCAGGCGGA 85745 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | || | ||| | |||||| | || || Sbjct 85746 ATTCCTTCCTTGTCCTGGATCTT-GGTCTTGACGTTGTCGATGGTGTCAGAGGGCTCAAC 85804 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || || || || || || ||||||||| Sbjct 85805 ATCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATA 85853 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| |||||||| || ||||| ||| || || |||||||| ||| | ||||| | Sbjct 85865 ACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCC 85924 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | || ||||||||||| ||||||||||| ||||| |||| | ||||| || Sbjct 85925 GTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCAGGCGGAATTCCTTCCTT 85984 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || || | || | ||| | |||||| | || || || | |||| Sbjct 85985 GTCCTGGATCTT-GGTCTTGACGTTGTCGATGGTGTCAGAGGGCTCAACATCGAGGGTGA 86043 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || || || || || || |||||||| Sbjct 86044 TGGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 86080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702818206400