Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq128 140 3e-28 seq61 131 1e-25 >seq128 Length=686783 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29884 || ||| | || ||||||| |||| ||||| | |||||| || ||| | | ||| Sbjct 551764 TTGATCTTGAGCTTGGGAAACGGTCGAGGCTCACGCTCGAGTTGCTCCTTTAAGGCATCC 551823 Query 29885 ACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGC 29944 || | || || |||| ||| || || || | | ||| |||||||||||||| | | | Sbjct 551824 ACATGATTCAAATAGATGTGCGCATCGCCAATGACGTGAACAAACTCTCCCGGCTTTCGT 551883 Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || ||||| ||||| ||||||| ||| | ||||| |||||| || ||||| || ||||| Sbjct 551884 CCCGTGACTTGAGCAATCATGTGCGTCAAGAGAGCGTAGCTCGCAATGTTGAACGGTACT 551943 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 ||||| ||||||||| | | ||| || | |||||||||||| || Sbjct 551944 CCGAGTCCCATGTCCGCACTGCGCTGATACAACTGACACGAGAGTTC 551990 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 30059 CTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 || || ||||||||||| | || |||||||| | ||||| | |||||| ||| Sbjct 552067 CTTACATAAAACTGACAAAACATATGACACGGAGGCAACGCCATAATCGGCAAGTCCTTG 552126 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 || |||||||| || || ||||||| ||||| || | ||| | || || | | Sbjct 552127 GGATTCCAGGCCGTCAAGACAATGCGCCGATCTTCGGGATGATTCTTAATTTTATCGATG 552186 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 | |||||| || | ||| || | ||| || || ||| || ||||||| Sbjct 552187 CAATCCGCCAGCTGGTCGATGCCCTGTCCGGTGTAATCGGCGTGCATATCTTTGTACTCG 552246 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 ||||| || || | ||||||||| |||||||| ||||| ||||| || ||| | ||| Sbjct 552247 GCTCCAAAGTGACGCCACTGGAAGCCGTACACGGGTCCAAGGTCCCCGACTTGTCGATGC 552306 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30348 || ||| || || | ||| || | ||||| ||| | |||||||| Sbjct 552307 GTCAATCCCAACTGATCGAGAAACTCGCGCGAACCATTGCCATCCCAGAT 552356 >seq61 Length=553271 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29884 || ||| | || ||||||| || | ||||| | |||||| || |||| | ||| Sbjct 19105 TTGATCTTGAGCTTGGGAAACGGCCGAGGCTCGCGCTCGAGTTGCTCTTTCAAAGCATCC 19046 Query 29885 ACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGC 29944 || | || || |||| || || || || | | ||| |||||||||||||||| | | Sbjct 19045 ACATGATTCAAATAGATATGCGCATCGCCAATGACGTGAACAAACTCTCCCGGTTTTCGT 18986 Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || || |||||||| ||||||| ||| | ||||| |||||| || ||||| || || || Sbjct 18985 CCCGTAACGTGAGCGATCATGTGCGTCAAGAGAGCGTAGCTCGCAATGTTGAACGGAACT 18926 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 || |||||||||||| | | ||| || | |||||||||||| || Sbjct 18925 CCAAGCCCCATGTCCGCACTACGCTGATACAACTGACACGAGAGTTC 18879 Score = 87.8 bits (96), Expect = 1e-12 Identities = 267/410 (65%), Gaps = 2/410 (0%) Strand=Plus/Minus Query 30059 CTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 || || ||||||||||| | || |||||||| | ||||| | |||||| ||| Sbjct 18804 CTTACATAAAACTGACAAAACATATGACACGGAGGCAACGCCATAATCGGCAAGTCCTTG 18745 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 || |||||||| || | ||||| | |||||| || | ||| | || || | | Sbjct 18744 GGATTCCAGGCCGTCAACACAATGCGTCGGTCTTCGGGATGATTCTTAATTTTATCGATG 18685 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 || ||||||||| | ||| || | ||| || | ||| || |||||| Sbjct 18684 CAGTCCGCCAGCTGATCGATGCCCTGTCCGGTGTAATCGGTATGCATATCTTGGTACTCG 18625 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 ||||| || || | ||||||||| |||||||| ||||| ||||| || ||| | || Sbjct 18624 GCTCCAAAGTGACGCCACTGGAAACCGTACACGGGTCCGAGGTCCCCAACTTGTCGATGT 18565 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30358 | || ||| || || | || || | ||||| ||| | ||||| || | | | | Sbjct 18564 TTCAATCCCAACTGATCGAGGAACTCCCGCGAACCATTGCCATCCCAAATGTGAATCTTC 18505 Query 30359 TTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTG-ACGAACCACAGCAGCTCCTCCAC 30417 || | | ||| || |||| ||| || || ||| | ||||||| || || || | Sbjct 18504 TTGGCGGCGAGATCATTGGCGTTCGTATTTCC-CTGAATAAACCACAACAATTCTTCGGC 18446 Query 30418 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCT 30467 ||| | |||| ||| | ||||| ||||| || || || | |||| Sbjct 18445 CACGCCTCTCCAGAAGGTTCGTTTGGTGGTGAGAAGAGGCAATCGACCCT 18396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308939187140