Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq232 120 2e-22 seq226 120 2e-22 seq41 120 2e-22 seq120 109 4e-19 seq2 109 4e-19 >seq232 Length=134552 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || ||||||||||| ||||| | || |||||||| || || || || || || | || Sbjct 133269 ATTCAGATTTTCGTCAAAACTTTGACCGGAAAAACTATTACGCTTGACGTCGAGCCGTCG 133210 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || ||||| ||||| |||||| | || || || || Sbjct 133209 GACACGATCGATAATGTCAAGAC-CAAAATCCAAGACAAGGAAGGTATTCCTCCGGACCA 133151 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || |||||||| || || ||||||| | |||||||||| |||||||||| Sbjct 133150 GCAACGTCTCATTTTTGCCGGTAAGCAGTTGGAAGATGGACGCACTTTAAGCGATTACAA 133091 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || ||| || ||| | ||| | | ||||| || || Sbjct 133090 TATTCAAAAGGAAAGCACTTTGCATCTTGTTCTGCGATTGCGCGGTGG 133043 >seq226 Length=603765 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || ||||| || ||||| ||||| ||||| || | Sbjct 85852 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACCATCACCCTCGATGTTGAGCCCTCT 85793 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | ||||| ||||| | ||||| ||||| Sbjct 85792 GACACCATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGAATTCCGCCTGATCA 85734 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || |||||||| || || || || |||| ||||| || |||| ||||| Sbjct 85733 ACAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACGTTGAGCGACTACAA 85674 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 85673 CATCCAGAAGGAGTCTAC 85656 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || ||||| || ||||| ||||| ||||| || | Sbjct 86080 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACCATCACCCTCGATGTTGAGCCCTCT 86021 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | ||||| ||||| | ||||| ||||| Sbjct 86020 GACACCATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGAATTCCGCCTGATCA 85962 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || |||||||| || || || || |||| ||||| || |||| ||||| Sbjct 85961 ACAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACGTTGAGCGACTACAA 85902 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 85901 CATCCAGAAGGAGTCTAC 85884 >seq41 Length=265118 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || ||||||||||| |||||| | || || ||||| || || ||||| || || | || Sbjct 262952 ATTCAGATTTTCGTCAAAACCTTGACCGGCAAAACTATTACGCTCGATGTCGAGCCGTCG 262893 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || ||| ||||| |||||| | ||||| || || Sbjct 262892 GACACGATCGATAATGTCAAGAC-CAAGATTCAAGACAAGGAAGGTATTCCGCCGGACCA 262834 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || |||||||| || || |||| || | ||||||||| |||||||||| Sbjct 262833 GCAACGTCTCATTTTTGCCGGAAAGCAGTTGGAGGATGGACGCACTTTGAGCGATTACAA 262774 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || ||| | ||||| | ||||| || || Sbjct 262773 TATTCAAAAGGAAAGTACTTTGCATCTCGTTTTGCGATTGCGCGGTGG 262726 >seq120 Length=609189 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || ||| | ||||| || || ||||| ||||| || || | | Sbjct 561783 AATGCAAATCTTCGTAAAGACCTTGACGGGTAAGACCATCACGCTCGATGTCGAGCCGTC 561842 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || || || | | ||||| || || | || || |||| Sbjct 561843 TGACACTATCGATAATGTCAAGACCAAGA-TCCAGGACAAGGAGGGAATTCCTCCGGATC 561901 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| | || || ||||| ||||| ||||||| | || || | |||||||| Sbjct 561902 AACAGCGTCTGATTTTCGCCGGAAAACAGTTGGAAGATGGTCGAACACTGTCCGATTACA 561961 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || ||||| || || || ||||| ||| | | ||||| || || Sbjct 561962 ACATCCAGAAAGAATCGACCTTGCATTTGGTTCTCCGATTGCGTGGTGG 562010 >seq2 Length=622807 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || ||| | ||||| || || ||||| ||||| || || | | Sbjct 353075 AATGCAAATCTTCGTAAAGACCTTGACGGGTAAGACCATCACGCTCGATGTCGAGCCGTC 353016 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || || || | | ||||| || || | || || |||| Sbjct 353015 TGACACTATCGATAATGTCAAGACCAAGA-TCCAGGACAAGGAGGGAATTCCTCCGGATC 352957 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||||| || || ||||| ||||| ||||||| | || || | ||| |||| Sbjct 352956 AACAGCGTTTGATTTTCGCCGGAAAACAGTTGGAAGATGGTCGAACACTGTCCGACTACA 352897 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || ||||| || || || ||||| ||| | | ||||| || || Sbjct 352896 ACATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGATTGCGTGGTGG 352848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008384749860