Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq194 232 6e-56 seq98 201 1e-46 seq103 95.1 1e-14 >seq194 Length=282305 Score = 232 bits (256), Expect = 6e-56 Identities = 389/557 (70%), Gaps = 8/557 (1%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| ||||| |||||||||||||||| ||||||||| | || |||| ||| || |||| Sbjct 115790 ACAACAAACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTGATCAATTCATTGGAAA 115849 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | | |||||||| | ||| | || || ||||| || || || || || || | Sbjct 115850 AGCAGAGACCGGGCATAAGACCCCGTTTCTTGAGCCAGAAAATGGCACAGAACGAGCCGG 115909 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GC-TGGC 4717 ||||||| |||||||| ||||| ||||| || || | || | || || || ||| Sbjct 115910 AAAAGAAAATGCCTTCGACGGCCGCAAATGCGACGCAACGTTCGGCAAAGGAAGCATGG- 115968 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 ||| | | | ||||| || |||||||| || || || | || ||||| | || | Sbjct 115969 -TTGGCGTCACACCATTGCAAGGCCCAGTTGGCCTTCTTTTGTACACACGGGACCGTATC 116027 Query 4778 TATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAG 4837 || || || || | | |||||| ||||| |||| || || || || |||| Sbjct 116028 AATGGCCCGCAACAAATGATCTTTTTCCTTGGGGTCACGAATGTAGGTATCAATGAGTAA 116087 Query 4838 GCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGC 4897 ||| | ||| ||| || ||||| | ||||| || ||||| ||||| || | || Sbjct 116088 CGAGTACGTCTCACTATGAATGTTTTCGACGGCAATTTGGAATCCATAAAAACAGCGGGC 116147 Query 4898 TTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 ||||| | ||||| |||| ||||||| ||| | || ||||| || || |||||||| Sbjct 116148 TTCTGGTGATTGAATTTCGGTACAAAAGTTTTGCGCCAAATTTTCATTCACAATACCGTC 116207 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGT--CAGGCTTAAGT 5015 ||| ||||| ||||||||||| || || | ||||| |||||| | || || Sbjct 116208 CGAGGCGGCAAAGAACGCCAAAACGTGTGACACAAAGTGTCGTTCGTTGCTGGACAAA-- 116265 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 || ||||| | ||||||| | | ||||||| |||||| | ||||| || || ||| Sbjct 116266 TTCTTCCAATCTTGCAAATCACTGGCCAAATCAATTTCTTCGGCCGTCCAGAAAGAAGCT 116325 Query 5076 TCCGCTTTTTTGTACAT 5092 || |||||||||||||| Sbjct 116326 TCGGCTTTTTTGTACAT 116342 >seq98 Length=427084 Score = 201 bits (222), Expect = 1e-46 Identities = 379/556 (68%), Gaps = 6/556 (1%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 ||| || ||| |||||||||||||||| ||||||||| | ||||||| |||||| |||| Sbjct 135029 ACAGTAGACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTAATCAATTCGTTGGAAA 135088 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | | |||||||| | ||| | || || |||||||| || || ||| || || | Sbjct 135089 AGCAAAGACCGGGCATGAGACCCCGTTTCTTGAGCCAAAAAATGGCACAAAAGGAACCGG 135148 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT 4719 ||||||| |||||||| ||||| ||||| || || | || | | || || || | Sbjct 135149 AAAAGAAAATGCCTTCGACGGCCGCAAAGGCGACACAGCGTTCCGCAAAGGA---AGCGT 135205 Query 4720 TGT---CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGT 4776 ||| | | | ||||| || ||||| | || || || | || ||||||| || | Sbjct 135206 TGTTCGCGTCACACCATTGCAAGGCCCAATGGGCCTTCTTTTGTACACACGGAACCGTAT 135265 Query 4777 ATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 || || || || | | || || || || |||| || || || || | | Sbjct 135266 CAATGGCCCGCAACAAATGATCCTTCTCTTTCGGATCGCGAATGTACGTATCAATCAAAA 135325 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 | ||| |||| || || ||||| | ||||| || ||||||||||| || | | Sbjct 135326 GAGAATAGGTTTCGCTGTGAATGTTTTCGACGGCAATTTGGAATCCGTAAAAACAACGGG 135385 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 |||| | ||||| |||| ||||||| ||| | | || ||||| || || || |||| Sbjct 135386 CTTCCGGCGATTGAATTTCGGTACAAAAGTTTTGTGCCAAATTTTCATTCACAATGCCGT 135445 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT 5016 | || ||||| |||||||| || || || | ||||| |||||| | | | Sbjct 135446 CGGACGCGGCAAAGAACGCCAACACGTGCGACACAAAGTGACGTTCGTTGCTCGACAAAT 135505 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 |||||| | ||||||| | | | ||||| |||||| | |||||||| || |||| Sbjct 135506 GTTTCCAATCTTGCAAATCACTGGCGAGATCAATTTCTTCGGCCGTCCAAAAGGAAGCTT 135565 Query 5077 CCGCTTTTTTGTACAT 5092 | |||||||||||||| Sbjct 135566 CGGCTTTTTTGTACAT 135581 >seq103 Length=133562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| ||| ||||| ||||| || | ||||| ||||| || ||||| ||| Sbjct 27655 CAGGCAAACGAACAGTGCAATCCTTCATCACGACTAATGAGTTCATTGCTGAACGTCAAT 27596 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 |||||||| | || | || || |||||||| || || ||| | || |||||||| Sbjct 27595 CCGGGCATGAGTCCCCGTTTCTTGAGCCAAAAAATGGCACAAAAGGCGCCCGAAAAGAAG 27536 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCG 4699 |||||||| ||||| ||||| || || ||||| Sbjct 27535 ATGCCTTCCACGGCCGCAAAGGCCACCAATCG 27504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048064623235