Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq295 129 1e-24 seq5 89.7 1e-12 >seq295 Length=301924 Score = 129 bits (142), Expect = 1e-24 Identities = 262/387 (68%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 61079 TCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAAC 61138 |||| ||| ||||||||| || |||||||||||| ||||| ||||| ||||||||||| Sbjct 77942 TCGATTTTATCAAGCATCTACGAGTGAACTGTATGGCAAAGTCCAAGAGATTCCTCAAAC 78001 Query 61139 AGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTG 61198 |||| ||| ||||| ||||| || || || | || || |||| | || | ||| Sbjct 78002 CGAAAAGACACCGTTCTATCCGCGCTCTCCTTACGCCGTAGCCAAACAGTTCGGCTTCTG 78061 Query 61199 GATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAA 61258 || | || ||| | || | || ||||||| |||||| ||| ||||| Sbjct 78062 GAACATAATCAACTACAGAGAAGCATACAACATGTTTGCATGTAATGGTATTCTGTTCAA 78121 Query 61259 TCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGC 61318 |||||| || | || |||| |||||||||| | |||||||| || || || Sbjct 78122 TCACGAATCCCCTAGAAGGGGTCCGACGTTTGTGACTAGGAAAATTACTCGTGCCGTGGC 78181 Query 61319 AAATATTTTTAACGG--TGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGA 61376 ||| ||| | | ||| | ||||||| |||||| | || | ||| || Sbjct 78182 GCGAATTCACCTCGGCAAGCAGCAAACAG--TGTATCTCGGAAACCTGAACGCGAAACGA 78239 Query 61377 GATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACT 61436 || ||||| | || | || || || |||| ||||||||| ||| |||| |||||| Sbjct 78240 GACTGGGGTCACGCAAAGGACTACATAGAGGGTATGTGGTTAATGCTGCAGCAAGATCAA 78299 Query 61437 CCAGATGACTACGTTATTGCGACTGGA 61463 ||||| ||||| || | || || ||| Sbjct 78300 CCAGAGGACTATGTCTTGGCCACCGGA 78326 >seq5 Length=391144 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/163 (72%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||| |||||| |||| | ||| ||||||||||||||| || || ||||| Sbjct 174325 CTAATTGGAATGAACAGTGAATTGATGAAACAGTACATCGAATTTGTGGCTGACCG---- 174270 Query 230506 TTTGTTGCA----CTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTAT 230561 | | ||||| || || | ||||||||| | |||| || || || | | || Sbjct 174269 TCTATTGCAATCCCTAGGAGTCCCCAAAGTGTACCATTCTACTAATCCATTCGAGTGGAT 174210 Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAG 230604 ||| |||||||||||||||||||| || ||||| || || ||| Sbjct 174209 GGAACTCATTTCGCTTCAAGGGAAAACGAACTTTTTTGAGAAG 174167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057714786944540