Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 143 3e-29 seq5 120 3e-22 seq250 93.3 4e-14 seq2397 84.2 2e-11 seq80 84.2 2e-11 >seq7 Length=130303 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40708 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCT 40766 || ||||| || |||||||||||| |||| || |||||| |||||| | | |||| | Sbjct 35703 ACTCTCACTGGTAAAACCATCACCCTCGATGTGGAAGCCTCCGACACTATCGAGAACG-T 35761 Query 40767 CAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGC 40826 ||| | ||||| | |||||||| |||||||| | || |||||| | ||||| | ||| Sbjct 35762 GAAGCAGAAAATCCAGGACAAAGAAGGCATCCCGCCTGATCAGCAAAGGCTCATTTTCGC 35821 Query 40827 GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCAC 40886 || || |||||||| |||| ||||| ||| ||||||||||||||||||||| | || Sbjct 35822 AGGGAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCAAC 35881 Query 40887 GCTGCATCTAGTGTTGCG 40904 ||||| | || ||||| Sbjct 35882 CTTGCATTTGGTCTTGCG 35899 >seq5 Length=391144 Score = 120 bits (132), Expect = 3e-22 Identities = 295/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Minus Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813 |||| || || || || || || ||||| || || || ||||||||||| | || | Sbjct 174947 ACGTCCTTGCTTTCTTTGCTGCAAGCGATGGTATTGTGAACGAGAATCTCGCTGAAAACT 174888 Query 116814 TCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 | || ||| || || || ||| | || || || || |||||||| || || ||||| || Sbjct 174887 TTGC-CAGCGAAGTACAAGTGCCTGAAGCTCGCTGTTTCTACGGTTTCCAAATCGCTGTG 174829 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 || ||| | || || ||| | ||||| |||||||||||| ||| | | | | Sbjct 174828 GAAAACATCCATTCTGAAGTCTATTCACTCCTCATCGACACTTACATTAAAGATAAGAAA 174769 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 ||||| || | || ||||| ||| | || || || || || ||| |||||| || Sbjct 174768 GAGAAAGACCACCTTTTCAACGCAATCCAAACCATCCCCTGTGTGAAACGGAAGGCAGAC 174709 Query 116993 TGGGCGCTGCGCTGGATCG--CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 |||||||||| |||| | ||||| | ||| |||| || || | | || | Sbjct 174708 TGGGCGCTGCAATGGACAGATCCGGC--TTATGCCTCCTTTCCTGAACGAGTTATTGCAT 174651 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 | || || || || || |||| || ||||| ||| | | || |||||| | || | Sbjct 174650 TTGCTGCTGTTGAAGGAATCTTTTTCTCGGGTTCATTCTGCTCAATCTTTTGGATAAAAA 174591 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | | || || ||||| || || ||| || || | || ||||||||||| || | Sbjct 174590 AGAGGGGACTTATGCCTGGTCTCTGCTTCTCTAATGAATTGATTTCCAGGGACGAAGGAC 174531 Query 117171 TGCATTGCGACTTTGCCTGTTTG 117193 | ||||| || || || || ||| Sbjct 174530 TACATTGTGATTTCGCATGCTTG 174508 >seq250 Length=105897 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTC 40782 |||||||| | || || ||||| | |||| | | ||| ||||| | ||||| | Sbjct 9617 ACCATCACTCTGGATGTGGAAGCTTCTGACACCATCGAAAATGTCAAGCAGAAAATCCAG 9558 Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| || |||| ||||| ||| | || | ||| || || ||| |||| Sbjct 9557 GACAAGGAAGGCATTCCACCGGATCAGCAGCGATTGATTTTCGCTGGAAAGCAGTTGGAG 9498 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || | ||||| || ||||||||| ||||||||||| |||| || ||| Sbjct 9497 GATGGACGCACTCTTTCCGACTACAATATCCAGAAGGAATCCACTCTTCAT 9447 >seq2397 Length=4497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761 || || || || || || || ||||||||| | || || |||||| | || | | | | Sbjct 1788 GTCAAGACCCTTACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAG 1847 Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821 | | || | ||||| | |||||||| ||||| || |||| ||||| ||| | || Sbjct 1848 AATGTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGCAGCGATTGATT 1907 Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 | || || || || |||| || | || || || || ||||| ||||||||||| Sbjct 1908 TTTGCTGGAAAGCAATTGGAGGATGGACGTACTCTGTCTGATTACAATATCCAGAAGGAA 1967 Query 40882 GCCACGCTGCATCTAGTGTTGCGC 40905 | || |||||| ||||| ||||| Sbjct 1968 TCTACTCTGCATTTAGTGCTGCGC 1991 >seq80 Length=198448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761 || || || || || || || ||||||||| | || || |||||| | || | | | | Sbjct 77217 GTCAAGACCCTTACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAG 77158 Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821 | | || | ||||| | |||||||| ||||| || | || ||||| ||| | || Sbjct 77157 AATGTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAGCGATTGATT 77098 Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 | || || ||||| |||| || | || || || || ||||| ||||||||||| Sbjct 77097 TTTGCTGGAAAACAATTGGAGGATGGACGTACTCTATCTGATTACAATATCCAGAAGGAA 77038 Query 40882 GCCACGCTGCATCTAGTGTTGCGC 40905 | || |||||| ||||| ||||| Sbjct 77037 TCTACTCTGCATTTAGTGCTGCGC 77014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515167304546080