Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2349 113 4e-20 seq2100 102 7e-17 seq3538 95.1 1e-14 seq218 91.5 1e-13 seq250 89.7 4e-13 seq2397 84.2 2e-11 seq80 84.2 2e-11 >seq2349 Length=20186 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | | | ||||||||| | ||| |||||||| || ||||| |||||| Sbjct 7469 ACCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGA 7528 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| ||| ||| || | ||||| |||||| | || | ||||||||||| ||||| Sbjct 7529 CAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGG 7588 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||| ||||| || ||||| ||||| || | || | ||| || | | ||| || Sbjct 7589 GATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCAC 7648 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | || |||||||||| ||| Sbjct 7649 ATCCAGTGTGATGGTCTTGCCGGTCAAAGT 7678 >seq2100 Length=597 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||||||||| || || || || ||||| ||||| || Sbjct 396 TACCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAG 337 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | || ||||| || | || ||||| |||||||| |||| Sbjct 336 AAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAG 277 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCG 118688 | || || ||||| || ||||| ||||| || | || | ||||||| ||| || Sbjct 276 GAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCT-TCC 218 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | || || || |||| ||| || |||||||||||||| Sbjct 217 ACATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 >seq3538 Length=489 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||||||||| || || || || ||||| ||||| || Sbjct 206 TACCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAG 265 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | || ||||| || | || ||||| |||||||| |||| Sbjct 266 AAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAG 325 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCG 118688 | || || ||||| || ||||| ||||| || | | | ||||||| ||| || Sbjct 326 GAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCT-TCC 384 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | || || || |||| || || |||||||||||||| Sbjct 385 ACATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 118533 AAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGC 118592 ||||||| || || || || ||||| ||||| || | ||| || ||| || | Sbjct 1 AAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAAT 60 Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 || ||||| || | || ||||| |||||||| ||||| || || ||||| || ||| Sbjct 61 TGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATT 120 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 || ||||| || | || | ||||||| ||| || || || | ||| | || || || Sbjct 121 TTCTGTTTGACATTCTCAATCGTGTCCGACGCT-TCCACATCCAGGGTGATGGTCTTCCC 179 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || |||||||||||||| Sbjct 180 AGTCAATGTCTTGACAAAAATCTGCAT 206 >seq218 Length=95557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||||| || || || || ||||| ||||| || | ||| || ||| Sbjct 87598 CAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATC 87539 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || || || || | || ||||| |||||||| ||||| || || ||||| || Sbjct 87538 TTCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATC 87479 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCG 118704 ||||| ||||| || | || | ||||||| ||| || || || | ||| | | Sbjct 87478 CTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCT-TCCACATCCAGGGTGATGG 87420 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || |||| || || |||||||||||||| Sbjct 87419 TCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 87386 >seq250 Length=105897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || || || || ||||| ||| | |||||| |||||| Sbjct 9442 ACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATCCTCC 9501 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| ||||||||| | || | ||||||||||| || || ||||| |||||||| Sbjct 9502 AACTGCTTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGG 9561 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC 118678 ||||| || || || | ||||| |||||| Sbjct 9562 ATTTTCTGCTTGACATTTTCGATGGTGTC 9590 >seq2397 Length=4497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| || || | ||||| || || || || |||||||| || ||| || ||| Sbjct 1988 CAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCATC 1929 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | || |||||||| | || | ||||||||||| ||||| ||||| || ||||| Sbjct 1928 CTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTGTC 1869 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||||| || | || | ||| |||| | || || || | ||| | || Sbjct 1868 TTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATGGT 1809 Query 118706 TTTGCCGGTCAGAGTTTTTAC 118726 || || || || || || || Sbjct 1808 CTTACCAGTAAGGGTCTTGAC 1788 >seq80 Length=198448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| || || | ||||| || || || || |||||||| | ||| || ||| Sbjct 77017 CAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGTACGTCCATC 77076 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | ||||||||||| | || | ||||||||||| ||||| ||||| || ||||| Sbjct 77077 CTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTGTC 77136 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||||| || | || | ||| |||| | || || || | ||| | || Sbjct 77137 TTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATGGT 77196 Query 118706 TTTGCCGGTCAGAGTTTTTAC 118726 || || || || || || || Sbjct 77197 CTTACCAGTAAGGGTCTTGAC 77217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433787794872136