Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2397 116 6e-21 seq80 116 6e-21 seq826 109 8e-19 seq470 109 8e-19 seq218 109 8e-19 seq3664 107 3e-18 seq3592 107 3e-18 seq3538 107 3e-18 seq2100 107 3e-18 seq1543 107 3e-18 seq250 95.1 2e-14 seq2349 89.7 8e-13 >seq2397 Length=4497 Score = 116 bits (128), Expect = 6e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| | ||||||||| || ||||| ||||| || ||||| | | ||| || Sbjct 1984 ACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCATCCTCC 1925 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 1924 AATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTG 1866 >seq80 Length=198448 Score = 116 bits (128), Expect = 6e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| | ||||||||| || ||||| ||||| || ||||| | | ||| || Sbjct 77021 ACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGTACGTCCATCCTCC 77080 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| Sbjct 77081 AATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTG 77139 >seq826 Length=494 Score = 109 bits (120), Expect = 8e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||||| || | || ||||| || | ||| ||||| || ||||| || || || Sbjct 459 TCCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 400 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| ||||| Sbjct 399 AAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 340 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 339 AATTCCTTCCTTATCCTG 322 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 230 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 171 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 170 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 111 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 110 ATTCCTTCCTTATCCTG 94 >seq470 Length=818 Score = 109 bits (120), Expect = 8e-19 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 103 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTRAATATTGTAGTCAGAA 162 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 163 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 222 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 223 ATTCCTTCCTTATCCTG 239 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 331 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 390 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 391 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 450 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 451 ATTCCTTCCTTATCCTG 467 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 559 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 618 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| || || |||||||||| | ||||||||| |||||| Sbjct 619 AGAGTTCGACCATCTTCCAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 678 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 679 ATTCCTTCCTTATCCTG 695 >seq218 Length=95557 Score = 109 bits (120), Expect = 8e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||||| || | || ||||| || | ||| ||||| || ||||| || || || Sbjct 87613 TCCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 87554 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | ||| |||||||| || || |||||||||| | ||||||||| ||||| Sbjct 87553 AAGAGTTCGACCATCTTCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 87494 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 87493 AATTCCTTCCTTATCCTG 87476 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 87384 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 87325 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 87324 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 87265 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 87264 ATTCCTTCCTTATCCTG 87248 >seq3664 Length=1078 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 850 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 791 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 790 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 731 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 730 ATTCCTTCCTTATCCTG 714 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 1078 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 1019 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 1018 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 959 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 958 ATTCCTTCCTTATCCTG 942 >seq3592 Length=385 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 178 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 119 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 118 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 59 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 58 ATTCCTTCCTTATCCTG 42 Score = 96.9 bits (106), Expect = 5e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 146072 AAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAAT 146131 || || | ||| ||||| || ||||| || || |||||||||| | ||| || ||| Sbjct 385 AAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAAT 326 Query 146132 TGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||||| | ||||||||| |||||||||||||| ||||| || Sbjct 325 TGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 270 >seq3538 Length=489 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 208 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAA 267 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 268 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 327 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 328 ATTCCTTCCTTATCCTG 344 Score = 96.9 bits (106), Expect = 5e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 146072 AAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAAT 146131 || || | ||| ||||| || ||||| || || |||||||||| | ||| || ||| Sbjct 1 AAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAAT 60 Query 146132 TGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||||| | ||||||||| |||||||||||||| ||||| || Sbjct 61 TGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 116 >seq2100 Length=597 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 166 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 107 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 106 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 47 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 46 ATTCCTTCCTTATCCTG 30 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 394 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAA 335 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 334 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 275 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 274 ATTCCTTCCTTATCCTG 258 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| ||||| || ||||| || || |||||||||| | ||| || ||||| ||||| Sbjct 593 AGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCC 534 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||| | ||||||||| |||||||||||||| ||||| || Sbjct 533 CGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 486 >seq1543 Length=600 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 414 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 473 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 474 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 533 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 534 ATTCCTTCCTTATCCTG 550 Score = 105 bits (116), Expect = 1e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| || || ||| Sbjct 186 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 245 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || ||||| || || |||||||||| | ||||||||| |||||| Sbjct 246 AGAGTTCGACCATCTTCCAATTGCTTYCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 305 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 306 ATTCCTTCCTTATCCTG 322 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || |||||||||| | ||| || ||||| ||||| |||||||||| | | Sbjct 3 ATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGT 62 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| ||||| || Sbjct 63 TGCTGATCAGGAGGAATTCCTTCCTTATCCTG 94 >seq250 Length=105897 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||||||| | ||| ||||| || ||||| || || |||||||| | | ||| || Sbjct 9441 TACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATCCTC 9500 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || || |||||||| |||||||||| ||||||||||| ||||| ||||| || || || Sbjct 9501 CAACTGCTTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTG 9560 >seq2349 Length=20186 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || || || || ||||| || |||||||| || | ||| | | ||| || Sbjct 7488 ACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGACAAAGTACGCCCATCTTCC 7547 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| || ||||||| |||||||||||||| || ||||| ||||| || Sbjct 7548 AATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTG 7606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743451508303360