Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 6e-16 >seq7 Length=130303 Score = 98.7 bits (108), Expect = 6e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34141 TTCGTTGCAGATTTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTC 34200 || |||||| || ||| || || || || || | || |||| || || || ||| Sbjct 35931 TTTGTTGCAC-TTCCGTAGAG-CCACCACGAAGACGCAAGACCAAATGCAAGGTTGATTC 35874 Query 34201 TTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAAT 34260 ||||| |||||||||||||| || ||| |||| |||| |||||| ||||||||||| Sbjct 35873 CTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAAT 35814 Query 34261 GAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 ||||| ||||| || | |||| | || || ||||| || || ||||| | | Sbjct 35813 GAGCCTTTGCTGATCAGGCGGG-ATGCCTTCTTTGTCCTGGATTTTCTGCTTCACGTTCT 35755 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 | || | |||| | ||| || || | ||||||||||| || |||||||| Sbjct 35754 CGATAGTGTCGGAGGCTTCCACATCGAGGGTGATGGTTTTACCAGTGAGAGT 35703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323040272108480