Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 161 9e-35 >seq5 Length=391144 Score = 161 bits (178), Expect = 9e-35 Identities = 298/437 (68%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 16233 TACAAGCA----AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAAT 16288 |||||||| ||||||||||| | |||||||||||| || || || || || || Sbjct 174506 TACAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAG 174565 Query 16289 GTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAA 16348 ||||| ||||| ||||| | ||||| |||||||| || | | |||||||| || Sbjct 174566 CAGAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGAGCAGAATGAACCCGAG 174625 Query 16349 AAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttttta 16408 || || || |||||||| || |||||||||| | ||| ||| | | || Sbjct 174626 AAAAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCC 174685 Query 16409 ctttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATT 16468 ||| |||||| ||||| | ||| || |||| |||||| ||| | | ||| Sbjct 174686 GGATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATT 174745 Query 16469 GCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTA 16528 || || || | | | ||| ||||| ||||| ||| ||||| || || || | | Sbjct 174746 GCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAA 174805 Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCG 16588 || | ||| ||||| || || |||| || || || ||||| || || || | |||||| Sbjct 174806 TAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCA 174865 Query 16589 GATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTA 16648 | | ||||||||| | ||| |||| || | || ||||| || || |||||||| Sbjct 174866 GGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTT 174925 Query 16649 GCTGCAAAAAACGCAAG 16665 || ||||| || ||||| Sbjct 174926 GCAGCAAAGAAAGCAAG 174942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462465413478800