Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq745 84.2 2e-11 seq164 84.2 2e-11 >seq745 Length=3037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 20464 CAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTAT 20523 || ||||| |||||||| || || ||||| || ||||| ||||||||||||||||| ||| Sbjct 1256 CAGATGTACCAACGATCGGCGGACATGGGTCTTGGTGTCCCTTTCAATATTGCAAGCTAT 1315 Query 20524 GCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCAC 20583 || ||||| || | || || || ||||| | ||| | | || || | || || Sbjct 1316 GCTCTGCTAACCAGGTTAATCGCTCAAGTTACGGGATTACGAGCTGGAGAACTTGTTCAT 1375 Query 20584 ACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 ||| ||||| ||||| | || || || || || || || Sbjct 1376 GTCATTGGAGATGCGCACGTGTATCTCAACCACATCGACCC 1416 >seq164 Length=23564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 20464 CAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTAT 20523 || ||||| |||||||| || || ||||| || ||||| ||||||||||||||||| ||| Sbjct 16256 CAGATGTACCAACGATCGGCGGACATGGGTCTTGGTGTCCCTTTCAATATTGCAAGCTAT 16197 Query 20524 GCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCAC 20583 || ||||| || | || || || ||||| | ||| | | || || | || || Sbjct 16196 GCTCTGCTGACCAGGTTAATCGCTCAAGTTACGGGATTACGAGCTGGAGAACTTGTTCAT 16137 Query 20584 ACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 ||| ||||| ||||| | || || || || || || || Sbjct 16136 GTCATTGGAGATGCGCACGTGTATCTCAACCACATCGACCC 16096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399144797386810