Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq470 98.7 8e-16 seq3664 95.1 1e-14 seq2349 95.1 1e-14 seq2100 95.1 1e-14 seq826 95.1 1e-14 seq218 95.1 1e-14 seq3592 93.3 3e-14 seq3538 91.5 1e-13 seq1543 91.5 1e-13 >seq470 Length=818 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 346 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 405 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 406 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 465 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 466 TGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 525 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| |||||| |||||||| ||||| Sbjct 526 TTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 557 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||| ||| |||||||| || ||| | || Sbjct 118 AAGACCAAGTGGAGAGTTGATTCCTTCTRAATATTGTAGTCAGAAAGAGTTCGACCATCT 177 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 178 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 237 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 238 TGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 297 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| |||||| |||||||| ||||| Sbjct 298 TTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 574 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 633 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || || || |||| || || || || ||||| | || ||||| ||| Sbjct 634 TCCAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 693 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 694 TGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 753 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| |||||| |||||||| ||||| Sbjct 754 TTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 785 >seq3664 Length=1078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 835 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 776 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 775 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 716 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 715 TGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAAGGTGATGGTC 656 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| ||||| |||||||| Sbjct 655 TTCCCGGTCAATGTCTTGACAAAAATTTGCAT 624 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 1063 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 1004 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 1003 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 944 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 943 TGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAAGGTGATGGTC 884 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| ||||| |||||||| Sbjct 883 TTCCCGGTCAATGTCTTGACAAAAATTTGCAT 852 >seq2349 Length=20186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| ||| ||||| ||||| || ||| || || | || ||| Sbjct 7488 ACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGACAAAGTACGCCCATCTTCC 7547 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| || ||||||||||| ||||| || || ||||| | || ||||| ||| Sbjct 7548 AATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGG 7607 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || || | | | | | || ||||||| |||| || || |||||| Sbjct 7608 ATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCACATCCAGTGTGATGGTCTTG 7667 Query 45308 CCCGTCAGAGTCTTCAC 45324 || |||| ||||| ||| Sbjct 7668 CCGGTCAAAGTCTGCAC 7684 >seq2100 Length=597 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 379 AAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 320 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 319 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 260 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 259 TGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 200 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| |||||| ||||| || ||||| Sbjct 199 TTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| |||||||| || ||| | || |||| ||| ||||| || || Sbjct 586 TCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAA 527 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || || || ||||| | || ||||| ||| ||||| || || || | Sbjct 526 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTC 467 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | ||||| |||| ||| || ||||| || |||| ||||| ||| Sbjct 466 TCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACA 407 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 406 AAGATCTGCAT 396 >seq826 Length=494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 215 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 156 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 155 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 96 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 95 TGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 36 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| |||||||| ||||| Sbjct 35 TTCCCAGTCAATGTCTTGACAAAGATCTGCAT 4 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 443 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 384 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 383 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 324 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 323 TGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAAGGTGATGGTC 264 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| |||||||| ||||| Sbjct 263 TTCCCGGTCAATGTCTTGACAAAGATCTGCAT 232 >seq218 Length=95557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 87369 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 87310 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 87309 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 87250 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 87249 TGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 87190 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| ||||| |||||||| Sbjct 87189 TTCCCAGTCAATGTCTTGACAAAAATTTGCAT 87158 >seq3592 Length=385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| |||||||| || ||| | || |||| ||| ||||| || || Sbjct 370 TCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAA 311 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || || || ||||| | || ||||| ||| ||||| || || || | Sbjct 310 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTC 251 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | ||||| |||| ||| || ||||| || |||| |||||| ||| Sbjct 250 TCAATCGTGTCCGACGCTTCCACGTCCAAGGTGATGGTCTTCCCAGTCAAAGTCTTGACA 191 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 190 AAGATCTGCAT 180 >seq3538 Length=489 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 223 AAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 282 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||| || || |||| || || || || ||||| | || ||||| ||| Sbjct 283 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 342 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 343 TGGATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 402 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| ||||| || ||||| Sbjct 403 TTCCCAGTCAATGTCTTGACAAAAATCTGCAT 434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| |||||||| || ||| | || |||| ||| ||||| || || Sbjct 16 TCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAA 75 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || || || ||||| | || ||||| ||| ||||| || || || | Sbjct 76 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTC 135 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | ||||| |||| ||| || ||||| || |||| ||||| ||| Sbjct 136 TCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACA 195 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 196 AAAATCTGCAT 206 >seq1543 Length=600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || ||| | || Sbjct 201 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 260 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || || || |||| || || || || ||||| | || ||||| ||| Sbjct 261 TCCAATTGCTTYCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 320 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| || || || | | | ||||| | ||||| |||| ||| || ||| Sbjct 321 TGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 380 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| |||||||| ||||| Sbjct 381 TTCCCAGTCAATGTCTTGACAAAGATCTGCAT 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395036400899218