Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3664 114 1e-20 seq218 109 4e-19 seq826 102 6e-17 seq3538 100 2e-16 seq1543 98.7 8e-16 seq2100 93.3 3e-14 seq470 93.3 3e-14 seq3592 89.7 4e-13 >seq3664 Length=1078 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 832 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 773 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 772 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 713 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 712 ATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAAGGTGATGGTCTTC 653 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||||||||||| || ||||||||||||||| || Sbjct 652 CCGGTCAATGTCTTGACAAAAATTTGCATTGTT 620 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 1060 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 1001 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 1000 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 941 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 940 ATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAAGGTGATGGTCTTC 881 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| || |||||||||||||| Sbjct 880 CCGGTCAATGTCTTGACAAAAATTTGCAT 852 >seq218 Length=95557 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 87366 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 87307 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 87306 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 87247 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 87246 ATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 87187 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || |||||||| || ||||||||||||||| || Sbjct 87186 CCAGTCAATGTCTTGACAAAAATTTGCATTGTT 87154 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || |||||| Sbjct 87594 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCT 87535 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 87534 AATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 87475 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 87474 ATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 87415 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || |||||||| ||||| Sbjct 87414 CCAGTCAATGTCTTGACAAAAATCTGCAT 87386 >seq826 Length=494 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 440 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 381 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 380 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 321 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 320 ATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAAGGTGATGGTCTTC 261 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| || ||||| || ||||| Sbjct 260 CCGGTCAATGTCTTGACAAAGATCTGCAT 232 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 212 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 153 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 152 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 93 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 92 ATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 33 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || ||||| || ||||| Sbjct 32 CCAGTCAATGTCTTGACAAAGATCTGCAT 4 >seq3538 Length=489 Score = 100 bits (110), Expect = 2e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 226 ACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 285 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 286 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 345 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 346 ATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 405 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || |||||||| ||||| Sbjct 406 CCAGTCAATGTCTTGACAAAAATCTGCAT 434 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||| || || ||||| || ||||| |||||||| | | ||| || |||||||||||| Sbjct 3 GTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTG 62 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 || |||||| | || || | ||| ||||| || | ||||||||||| |||| Sbjct 63 CTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTT 122 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | ||| ||||| | || || | ||||||| | || || || Sbjct 123 CTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGT 182 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 |||||| || |||||||| ||||| Sbjct 183 CAATGTCTTGACAAAAATCTGCAT 206 >seq1543 Length=600 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 204 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 263 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 264 AATTGCTTYCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 323 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 324 ATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 383 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || ||||| || ||||| Sbjct 384 CCAGTCAATGTCTTGACAAAGATCTGCAT 412 >seq2100 Length=597 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 376 ACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 317 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 316 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 257 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 256 ATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 197 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || |||||||| ||||| Sbjct 196 CCAGTCAAAGTCTTGACAAAAATCTGCAT 168 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 18126 AGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTG 18185 || || ||||| || ||||| |||||||| | | ||| || |||||||||||| || Sbjct 595 AGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTT 536 Query 18186 CCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC 18245 |||||| | || || | ||| ||||| || | ||||||||||| |||| || Sbjct 535 CCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGT 476 Query 18246 TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAAT 18305 ||||| | ||| ||||| | || || | ||||||| | || || |||||| Sbjct 475 TTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAAT 416 Query 18306 GTTTTTACAAAAATTTGCAT 18325 || || ||||| || ||||| Sbjct 415 GTCTTGACAAAGATCTGCAT 396 >seq470 Length=818 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 349 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 408 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 409 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 468 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 469 ATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 528 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || ||||| || ||||| Sbjct 529 CCAGTCAAAGTCTTGACAAAGATCTGCAT 557 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || ||||| |||||||| | | ||| || ||||||| Sbjct 577 ACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 636 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 637 AATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 696 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 697 ATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 756 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || ||||| || ||||| Sbjct 757 CCAGTCAAAGTCTTGACAAAGATCTGCAT 785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||| || | ||| |||||||| | | ||| || ||||||| Sbjct 121 ACCAAGTGGAGAGTTGATTCCTTCTRAATATTGTAGTCAGAAAGAGTTCGACCATCTTCC 180 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || || | ||| ||||| || | ||||||||||| Sbjct 181 AATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 240 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| || ||||| | ||| ||||| | || || | ||||||| | || Sbjct 241 ATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTC 300 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || ||||| || ||||| Sbjct 301 CCAGTCAAAGTCTTGACAAAGATCTGCAT 329 >seq3592 Length=385 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||| || |||||||| || ||||| |||||||| | | ||| || |||||||||||| Sbjct 383 GTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTG 324 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 || |||||| | || || | ||| ||||| || | ||||||||||| |||| Sbjct 323 CTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTT 264 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | ||| ||||| | || || | ||||||| | || || || Sbjct 263 CTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACGTCCAAGGTGATGGTCTTCCCAGT 204 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| || || ||||| || ||||| Sbjct 203 CAAAGTCTTGACAAAGATCTGCAT 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379306745811210