Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1217 118 9e-22 seq5 116 3e-21 seq2100 111 1e-19 seq3664 107 2e-18 seq218 107 2e-18 seq3538 105 6e-18 seq250 102 7e-17 seq2349 98.7 9e-16 seq281 82.4 7e-11 >seq1217 Length=25202 Score = 118 bits (130), Expect = 9e-22 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 |||||| | || | ||| || |||||||||||| || || ||| ||| | ||| Sbjct 14851 ACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGTG 14910 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 |||||||||||||||||||| | ||| ||||| || || || | ||| || ||| Sbjct 14911 TACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTGATTG 14970 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 23175 ||||| |||||||||||||||||||||||| ||||| ||||| || || Sbjct 14971 CTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTC 15020 >seq5 Length=391144 Score = 116 bits (128), Expect = 3e-21 Identities = 294/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 57688 ACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGAT 57747 |||| | || || || || ||| |||||||||||| ||||||||| | | |||| | Sbjct 174947 ACGTCCTTGCTTTCTTTGCTGCAAGCGATGGTATTGTGAACGAGAATCTCGCTGAAAACT 174888 Query 57748 TTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTG 57807 || | ||||| |||||| | || || | || || ||||| || ||| | || | | Sbjct 174887 TTGCCAGCGAAGTACAAGTGCCTGAAGCTCGCTGTTTCTACGGTTTCCAAATCGCTGTGG 174828 Query 57808 AAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACG 57867 ||||| | ||||| ||| | ||||| || |||||||| || ||| | || || || | | Sbjct 174827 AAAACATCCATTCTGAAGTCTATTCACTCCTCATCGACACTTACATTAAAGATAAGAAAG 174768 Query 57868 AGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCG---ATCGCCAAGAAGGCA 57923 ||||| || |||||||| ||| |||| || ||| | | | || ||||||| Sbjct 174767 AGAAAGACCACCTTTTCAACGCAATCCAAACCATCCCCTGTGTGAAACG----GAAGGCA 174712 Query 57924 GAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCG 57983 || ||| | | |||||| | | || ||| | || | || | | || || Sbjct 174711 GACTGGGCGCTGCAATGGACAGATCCGGCTTATGCCTCCTTTCCTGAACGAGTTATTGCA 174652 Query 57984 TTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAA 58042 || || || || ||||| || || || ||||| || ||| |||| |||||||| || Sbjct 174651 TTTGCTGCTGTTGAAGGAATCTTTTTCTCGGGTTCATTCTGC-TCAATCTTTTGGATAAA 174593 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 || | || || ||||| || || || || || ||||| || | ||||| || Sbjct 174592 AAAGAGGGGACTTATGCCTGGTCTCTGCTTCTCTAATGAATTGATTTCCAGGGACGAAGG 174533 Query 58103 TCTCCATACTGATTTTGCGTGC 58124 || ||| |||||| || ||| Sbjct 174532 ACTACATTGTGATTTCGCATGC 174511 >seq2100 Length=597 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||| |||| || || || |||||| | || || ||| |||| Sbjct 168 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 227 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||||||| ||| ||| |||||||| | || || || ||| Sbjct 228 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 287 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || || |||||||| | ||| | || || || Sbjct 288 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 347 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||||||||| || |||| Sbjct 348 ATTCAGAAGGAATCGACTCTCCACTTGGT 376 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| || || || |||||| | || || ||| |||| Sbjct 396 ATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 455 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||||||| ||| ||| |||||||| | || || || ||| Sbjct 456 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 515 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || || |||||||| | ||| | || || || Sbjct 516 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 575 Query 31373 ATTCAAAAAGAATCGACTCT 31392 ||||| || ||||||||||| Sbjct 576 ATTCAGAAGGAATCGACTCT 595 >seq3664 Length=1078 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || |||||| | || || ||| |||| Sbjct 624 ATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 683 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||||||| ||| ||| |||||||| | || || || ||| Sbjct 684 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 743 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || || |||||||| | ||| | || || || Sbjct 744 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 803 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||| ||||| || |||| Sbjct 804 ATTCAGAAGGAATCAACTCTCCACTTGGT 832 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || |||||| | || || ||| |||| Sbjct 852 ATGCAAATTTTTGTCAAGACATTGACCGGGAAGACCATCACCTTGGATGTGGAAGCGTCG 911 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||||||| ||| ||| |||||||| | || || || ||| Sbjct 912 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 971 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || || |||||||| | ||| | || || || Sbjct 972 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 1031 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||| ||||| || |||| Sbjct 1032 ATTCAGAAGGAATCAACTCTCCACTTGGT 1060 >seq218 Length=95557 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || |||||| | || || ||| |||| Sbjct 87158 ATGCAAATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 87217 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||||||| ||| ||| |||||||| | || || || ||| Sbjct 87218 GACACAATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87277 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || || |||||||| | ||| | || || || Sbjct 87278 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 87337 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||| ||||| || |||| Sbjct 87338 ATTCAGAAGGAATCAACTCTCCACTTGGT 87366 >seq3538 Length=489 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || || || |||||| | || || ||| |||| Sbjct 206 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 147 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||||||| ||| ||| |||||||| | || || || ||| Sbjct 146 GACACGATTGAGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 87 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || || |||||||| | ||| | || || || Sbjct 86 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 27 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 ||||| || ||||||||||| || Sbjct 26 ATTCAGAAGGAATCGACTCTCCA 4 Score = 104 bits (114), Expect = 2e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || || || |||||| | || || ||| |||| Sbjct 434 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATCACCCTGGATGTGGAAGCGTCG 375 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | | |||||||||| ||| ||| |||||||| | || || || ||| Sbjct 374 GACACGATTGMGAATGTCAAACAGAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 315 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || || |||||||| | ||| | || || || Sbjct 314 CAACGTCTGATTTTTGCGGGAAAGCAATTGGAAGATGGTCGAACTCTTTCTGACTACAAT 255 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||||||||| || |||| Sbjct 254 ATTCAGAAGGAATCGACTCTCCACTTGGT 226 >seq250 Length=105897 Score = 102 bits (112), Expect = 7e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 31226 ACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCG 31285 || ||||| | || || ||| | || |||| |||||| ||||| |||| ||| | Sbjct 9617 ACCATCACTCTGGATGTGGAAGCTTCTGACACCATCGAAAATGTCAAGCAGAAAATCCAG 9558 Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 |||||||||||| | || || || |||||||| | || |||||||| || |||||||| Sbjct 9557 GACAAGGAAGGCATTCCACCGGATCAGCAGCGATTGATTTTCGCTGGAAAGCAGTTGGAG 9498 Query 31346 GACTCTATG-ACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || | | | ||| | ||| || || || || || ||||| ||||||||| ||||||| Sbjct 9497 GA-TGGACGCACTCTTTCCGACTACAATATCCAGAAGGAATCCACTCTTCATTTGGTACT 9439 >seq2349 Length=20186 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31209 AGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGG 31268 ||||| |||| ||||| || ||||| | || || || | || || | | || | | Sbjct 7680 AGACTTTGACCGGCAAGACCATCACACTGGATGTGGAGGCCTCTGATACCATTGAGAACG 7621 Query 31269 TCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCG 31328 | ||||||| ||| ||| ||||||||| | || || || |||||||| | ||||||| Sbjct 7620 TGAAACAGAAAATCCAGGATAAGGAAGGCATCCCTCCGGATCAGCAGCGATTGATATTCG 7561 Query 31329 CTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGA 31388 |||| ||||| |||||||| ||| || |||||||||||| || ||||| || | Sbjct 7560 CTGGTAAACAATTGGAAGATGGGCGTACTTTGTCCGATTATAACATCCAGAAAGAGTCCA 7501 Query 31389 CTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 | | || |||| || | ||| | || ||| Sbjct 7500 CATTGCACTTGGTGCTCCGTCTGCGAGGAGGT 7469 >seq281 Length=152016 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 57713 CGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGA 57772 |||||||||||| ||||||||| | | |||| ||| | ||||| |||||| | || Sbjct 65564 CGATGGTATTGTGAACGAGAATCTCGCTGAAAACTTTGCCAGCGAAGTACAAGTGCCTGA 65505 Query 57773 GGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTC 57832 || | || || ||||| || ||| | || | |||||| | ||||| ||| | ||||| Sbjct 65504 AGCTCGCTGTTTCTACGGTTTCCAAATCGCTGTGGAAAACATCCATTCTGAAGTCTATTC 65445 Query 57833 GCTACTCATCGATAC 57847 || |||||||| || Sbjct 65444 ACTCCTCATCGACAC 65430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445721500179360