Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 134 1e-26 >seq5 Length=391144 Score = 134 bits (148), Expect = 1e-26 Identities = 296/436 (68%), Gaps = 7/436 (2%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 || || || ||||||||||||| |||||||| || || | ||||||||| || Sbjct 174509 AAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAG 174568 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAA 11745 | || ||||| | ||| | |||||||||||||| || | |||| |||||||| || || Sbjct 174569 AGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTG-AGCAGAATGAACCCGAGAA 174627 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA-TACCTTGTTGCTAG 11804 || ||||| || ||||| |||||||| | |||| ||| | | | || | Sbjct 174628 AAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCGG 174687 Query 11805 A--TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 | | |||||| ||||| || || ||| ||| || || || |||| || || Sbjct 174688 ATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATTGC 174747 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 ||| || | || ||| ||| | |||||| | | || || || || | | ||| Sbjct 174748 GTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAATA 174807 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 | ||| ||||| || ||||||| ||| ||||| || || |||||||| || || || | Sbjct 174808 GACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCAG- 174866 Query 11983 ACAC-TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 ||| ||||| || ||| |||| || | |||||| || ||||||||||| || | Sbjct 174867 GCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTTG 174926 Query 12042 ATGCAAAAAATGCTAG 12057 ||||| || || || Sbjct 174927 CAGCAAAGAAAGCAAG 174942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468477607839520