Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 172 7e-38 seq1217 84.2 3e-11 >seq5 Length=391144 Score = 172 bits (190), Expect = 7e-38 Identities = 300/433 (69%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| ||||||||||| || ||||| || ||||| || ||| ||||| || || || Sbjct 174508 CAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCA 174567 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 ||| || ||||| || || | |||||| | |||||| || || ||| ||||| || || | Sbjct 174568 GAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGA-GCAGAATGAACCCGAGA 174626 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC-- 36330 | || |||||||| || || ||||| ||||||| || || | | |||| | Sbjct 174627 AAAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCG 174686 Query 36331 -ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 || | |||| | | ||||| || |||||| ||| ||||| || || || | || | Sbjct 174687 GATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATTG 174746 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | || || || | || ||| || || ||||||||| || || || || | || || Sbjct 174747 CGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAAT 174806 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 | | ||| ||||| |||||||| | || ||||| || ||||||||||| | ||| || | Sbjct 174807 AGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCAG 174866 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | |||||||| | ||| ||| || | ||| || ||||| || || || || | Sbjct 174867 GCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTTG 174926 Query 36570 CTGCAAAAAACGC 36582 | ||||| || || Sbjct 174927 CAGCAAAGAAAGC 174939 >seq1217 Length=25202 Score = 84.2 bits (92), Expect = 3e-11 Identities = 276/421 (66%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 66171 TGCCACGGTTCCAAGTATATGGCCATA-ACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 66229 ||||| ||||||| || ||||| | || || || | ||| ||| || ||||| | Sbjct 15431 TGCCAAGGTTCCAGATAAATGGCAAACGACCCCTTGC-GCTTGCCTCCACCTTGATCAAC 15489 Query 66230 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 66289 |||||| ||||||| | || | || | | ||| || | || ||||| || ||||| || Sbjct 15490 GTATCTGGCGGTGTCACTAAACACACGGAGCATAGGCACGATCCCATTCGAGGTACCGTT 15549 Query 66290 GGT-CCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCC 66348 || ||| || || || | | | |||||| || ||| | || || ||||| | Sbjct 15550 CGTTCCCCGA-ATGTAAGAGCTCGTAGAACGAATGTTGTGAATCGCTAACCCGATTCCGC 15608 Query 66349 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 66408 | || || || || |||| || | ||||| ||||| ||||| || || || | Sbjct 15609 CCGCATACTTGGAAATACATGCACAACTTTTTAGTGTATCGTAGATTCCTTCAATCGAGT 15668 Query 66409 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 66468 || | |||| | || | || || ||||| ||| | ||| || || || | Sbjct 15669 CACTCTTCATCGTCAGCAAGAAGCAAGAAGACAGCTGGGGCTTTTCAGTGCCGGCGTTGA 15728 Query 66469 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 66528 | || || || | ||||||||| || | | || | | ||||||||| ||||| | Sbjct 15729 ACAATGTTGGCGTAGCGTGCGTGAAGTACCGCTGGGACATCAAATTGTACGTTTCAATTG 15788 Query 66529 CTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 66587 | || || | | | ||| || || || | ||||||||||| |||||||||||||| Sbjct 15789 CACGATCAATGTTCTCCTTG-TGGATGCCGATAGCGACACGCATGTACATGTGCTGAGGT 15847 Query 66588 C 66588 | Sbjct 15848 C 15848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658106505544720