Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 172 8e-38 seq1217 87.8 3e-12 >seq5 Length=391144 Score = 172 bits (190), Expect = 8e-38 Identities = 301/434 (69%), Gaps = 7/434 (2%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| ||||||||||| || || || || ||||| || ||| | ||| || || || Sbjct 174508 CAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCA 174567 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 ||| || ||||| || || | |||||| | |||||| || || ||| ||||| || || | Sbjct 174568 GAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGA-GCAGAATGAACCCGAGA 174626 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC----GCTG 50130 | ||||||||||| || || ||||| |||| || || || | | ||| || | Sbjct 174627 AAAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCG 174686 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 || | |||| | | ||||| || |||||| ||| ||||| || || |||| || Sbjct 174687 G-ATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATT 174745 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || || || || | || ||| || || ||||||||| ||||| ||||| | || | Sbjct 174746 GCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAA 174805 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 || | ||| ||||| |||||||| | || || || || ||||||||||| | ||| || Sbjct 174806 TAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCA 174865 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | | || ||||| | ||| |||||| | ||| || ||||| || || || || Sbjct 174866 GGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTT 174925 Query 50371 GCTGCAAAAAACGC 50384 || ||||| || || Sbjct 174926 GCAGCAAAGAAAGC 174939 >seq1217 Length=25202 Score = 87.8 bits (96), Expect = 3e-12 Identities = 278/426 (65%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 80044 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGA 80103 |||| ||||| ||||||| || ||||| | ||| || ||| ||| || ||| Sbjct 15425 TCAGCGTGCCAAGGTTCCAGATAAATGGCAAACGACCCCTTGCGCTTGCCTCCACCTTGA 15484 Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163 || | |||||| ||||||| | || | || | | ||| || | || ||||| || ||| Sbjct 15485 TCAACGTATCTGGCGGTGTCACTAAACACACGGAGCATAGGCACGATCCCATTCGAGGTA 15544 Query 80164 CCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTAT 80222 || || || ||| || || || | | | |||||| || ||| | || || || Sbjct 15545 CCGTTCGTTCCCCGA-ATGTAAGAGCTCGTAGAACGAATGTTGTGAATCGCTAACCCGAT 15603 Query 80223 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 80282 ||| || || || || || |||| || | ||||| ||||| ||||| || || || Sbjct 15604 TCCGCCCGCATACTTGGAAATACATGCACAACTTTTTAGTGTATCGTAGATTCCTTCAAT 15663 Query 80283 GCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 80342 ||| |||| | || | || || ||||| ||| | ||| || || Sbjct 15664 CGAGTCACTCTTCATCGTCAGCAAGAAGCAAGAAGACAGCTGGGGCTTTTCAGTGCCGGC 15723 Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 80402 || || || || || | ||||||||| || | | |||| | ||||||||| || Sbjct 15724 GTTGAACAATGTTGGCGTAGCGTGCGTGAAGTACCGCTGGGACATCAAATTGTACGTTTC 15783 Query 80403 AATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCT 80461 ||| || || || | | | ||| || || || | ||||||||||| ||||||||| Sbjct 15784 AATTGCACGATCAATGTTCTCCTTG-TGGATGCCGATAGCGACACGCATGTACATGTGCT 15842 Query 80462 GAGGTC 80467 |||||| Sbjct 15843 GAGGTC 15848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718196452375120