Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2397 93.3 3e-14 seq80 93.3 3e-14 seq3664 86.0 5e-12 seq2349 86.0 5e-12 seq218 82.4 6e-11 >seq2397 Length=4497 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| ||||| | ||| ||||| || | ||||||||| ||| Sbjct 2002 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAC 1943 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||||||| || || ||||||||||||||||| ||||| | || Sbjct 1942 AGAGTACGTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGA 1883 Query 43003 ACACCTTCTTTTTC 43016 | |||||||| || Sbjct 1882 ATGCCTTCTTTGTC 1869 >seq80 Length=198448 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| ||||| | ||| ||||| || | ||||||||| || Sbjct 77003 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAT 77062 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || ||||||||||| || ||||||||||||||||| ||||| | || Sbjct 77063 AGAGTACGTCCATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 77122 Query 43003 ACACCTTCTTTTTC 43016 | |||||||| || Sbjct 77123 ATGCCTTCTTTGTC 77136 >seq3664 Length=1078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| |||| ||| ||||| || | |||||| || || | || || | || Sbjct 1063 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 1004 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||| || || |||||||||| || || ||||| | || | ||||| || || Sbjct 1003 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 944 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| || |||||| | ||| |||||| || || || || | || || || Sbjct 943 TGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAAGGTGATGGTC 884 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| | || || |||||||||||||| Sbjct 883 TTCCCGGTCAATGTCTTGACAAAAATTTGCAT 852 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| |||| ||| ||||| || | |||||| || || | || || | || Sbjct 835 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 776 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||| || || |||||||||| || || ||||| | || | ||||| || || Sbjct 775 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 716 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| || |||||| | ||| ||||| || || || || | || || || Sbjct 715 TGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAAGGTGATGGTC 656 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || ||||| | || || ||||||||||||||| Sbjct 655 TTCCCGGTCAATGTCTTGACAAAAATTTGCATT 623 >seq2349 Length=20186 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| | | |||||| || | ||| ||| || || | || ||||||||| Sbjct 7470 CCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGAC 7529 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || || || ||||||||||| ||||| | || Sbjct 7530 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGG 7589 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| || ||| || | ||| || || ||||| || Sbjct 7590 ATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCACA 7649 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 || | || || || || ||||| | ||| | ||| Sbjct 7650 TCCAGTGTGATGGTCTTGCCGGTCAAAGTCTGCAC 7684 >seq218 Length=95557 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| |||| ||| ||||| || | |||||| || || | || || | || Sbjct 87369 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 87310 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||| || || |||||||||| || || ||||| | || | ||||| || || Sbjct 87309 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 87250 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| || |||||| | ||| |||||| || || || || | || || || Sbjct 87249 TGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTC 87190 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || | || || ||||||||||||||| Sbjct 87189 TTCCCAGTCAATGTCTTGACAAAAATTTGCATT 87157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381332146883364