Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 181 1e-40 seq1217 95.1 2e-14 >seq5 Length=391144 Score = 181 bits (200), Expect = 1e-40 Identities = 302/433 (70%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| ||||||||||| || || || || || || || ||| ||||| || || || Sbjct 174508 CAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCA 174567 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179 ||| || ||||| || || | |||||| | |||||| || || ||| ||||| || || | Sbjct 174568 GAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGA-GCAGAATGAACCCGAGA 174626 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC-- 42237 | ||||||||||| || || ||||| ||||||| || || | | |||| | Sbjct 174627 AAAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCG 174686 Query 42238 -ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 || | |||| | | ||||| || |||||| ||| ||||| || || |||| || | Sbjct 174687 GATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATTG 174746 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | || || || | || ||| || || ||||||||| || || ||||| | || || Sbjct 174747 CGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAAT 174806 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 | | ||| ||||| |||||||| | || || || || ||||||||||| | || || | Sbjct 174807 AGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCAG 174866 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || |||||||| | ||| |||||| | ||| |||||||| || || || || | Sbjct 174867 GCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTTG 174926 Query 42477 CTGCAAAAAACGC 42489 | ||||| || || Sbjct 174927 CAGCAAAGAAAGC 174939 >seq1217 Length=25202 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| |||| ||||| || ||||| || || ||| ||||| | | ||| Sbjct 14851 ACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGTG 14910 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || | || |||||| || || | || |||||||| || || | |||||||||||| Sbjct 14911 TACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTGATTG 14970 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || || || |||| |||||| || || ||| ||||||| || |||||||| ||||| Sbjct 14971 CTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTTGAGAA 15030 Query 71863 TC 71864 || Sbjct 15031 TC 15032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 278/426 (65%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 72127 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGA 72186 |||| ||||| ||||||| || ||||| | ||| || ||| ||| || ||| Sbjct 15425 TCAGCGTGCCAAGGTTCCAGATAAATGGCAAACGACCCCTTGCGCTTGCCTCCACCTTGA 15484 Query 72187 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 72246 || | |||||| ||||||| | || | || | | ||| || | || ||||| || | | Sbjct 15485 TCAACGTATCTGGCGGTGTCACTAAACACACGGAGCATAGGCACGATCCCATTCGAGGTA 15544 Query 72247 CCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTAT 72305 || || || ||| || || || | | | |||||| ||| ||| | || || || Sbjct 15545 CCGTTCGTTCCCCGA-ATGTAAGAGCTCGTAGAACGAATGTTGTGAATCGCTAACCCGAT 15603 Query 72306 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 72365 ||| || || || || || |||| || | ||||| ||||| ||||| || || || Sbjct 15604 TCCGCCCGCATACTTGGAAATACATGCACAACTTTTTAGTGTATCGTAGATTCCTTCAAT 15663 Query 72366 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 72425 ||| | |||| | || | || || ||||| ||| | ||| || || Sbjct 15664 CGAGTCACTCTTCATCGTCAGCAAGAAGCAAGAAGACAGCTGGGGCTTTTCAGTGCCGGC 15723 Query 72426 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 72485 || || || || || | ||||||||| || | | |||| | ||||||||| || Sbjct 15724 GTTGAACAATGTTGGCGTAGCGTGCGTGAAGTACCGCTGGGACATCAAATTGTACGTTTC 15783 Query 72486 AATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATATGCT 72544 ||| || || || | | | ||| || || || | ||||||||||| |||| |||| Sbjct 15784 AATTGCACGATCAATGTTCTCCTTG-TGGATGCCGATAGCGACACGCATGTACATGTGCT 15842 Query 72545 GAGGTC 72550 |||||| Sbjct 15843 GAGGTC 15848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671071599504080