Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1217 102 1e-16 seq146 102 1e-16 >seq1217 Length=25202 Score = 102 bits (112), Expect = 1e-16 Identities = 117/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 97201 CTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGC-AACAGC 97259 |||| | || || || |||||||| || |||||||||||| | ||| | || || ||| Sbjct 15028 CTCAAATTGAAACAGGCACTCCGTATATGCTCTACAAGGATTC-GTGCAATGCGAAAAGC 14970 Query 97260 AACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||| | | || || |||||| ||||||| |||| || ||||||||||||||| Sbjct 14969 AATCAACAAAATCTTGGTACAATCAAGTGCTCCAACTTGTGTACCGAAATTGTAGAGTAC 14910 Query 97320 GCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGC 97354 || |||| || ||||| ||||| ||| ||| || Sbjct 14909 ACCGCTCCAGATGAGACAGCAGTCTGCAATCTTGC 14875 >seq146 Length=179389 Score = 102 bits (112), Expect = 1e-16 Identities = 172/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| |||||||||| |||| || | |||||| || | | || || Sbjct 32608 GAAACCGTGGGTCAAGTGGCCTCCGGAAGGCAAGTCCAATCCCATAATACGGTCATGAGG 32549 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 || | | || ||||| |||||||||||||| ||||| ||||| ||||||||| Sbjct 32548 GTTCAACAGACCGGTGTATACGGCAAAGTTGGCGGGAGAGCCGGAGTAAGGTTGTACATT 32489 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 ||||||||| || | |||||| |||| ||| ||| || ||||| ||| Sbjct 32488 CACTCCCCACTCTTCCGAGTTCAAGCTGAAAGCTTCGAGGGCACGTTGCTGGCACAGCTT 32429 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGA 127682 |||| ||||| ||| || ||||||||||| || || || |||||| | Sbjct 32428 CTCGACCTTGTCGATGTGCTCATTCCCACCATAGTACCGAGCACCAGGGAGACCCTCGGC 32369 Query 127683 GTACTTGTT 127691 ||||||||| Sbjct 32368 GTACTTGTT 32360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740984556812080