Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq80 93.3 3e-14 seq3664 86.0 5e-12 seq2397 84.2 2e-11 seq2100 82.4 6e-11 seq218 82.4 6e-11 >seq80 Length=198448 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| || || || || || || || |||||||| |||| | | | || || Sbjct 77021 ACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGTACGTCCATCCTCC 77080 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| ||||| | ||||| || || || || ||||| ||||||||||| Sbjct 77081 AATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGG 77140 Query 15275 ATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| || ||| ||| | || |||||||| ||| ||||| ||||| ||||| || Sbjct 77141 ATTTT-CTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATGGTCTT 77199 Query 15334 ACCTGTCAGAGTTTTTAC 15351 ||| || || || || || Sbjct 77200 ACCAGTAAGGGTCTTGAC 77217 >seq3664 Length=1078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || || || || ||||| || ||| ||| | ||| Sbjct 1063 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 1004 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || || | |||| |||||| || || ||||||||||| || || Sbjct 1003 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 944 Query 15272 CAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| || ||| ||| | || || || || ||| ||||| ||||| ||||| Sbjct 943 TGGATTTT-CTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAAGGTGATGGT 885 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || ||||||||||||||| Sbjct 884 CTTCCCGGTCAATGTCTTGACAAAAATTTGCATA 851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || || || || ||||| || ||| ||| | ||| Sbjct 835 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 776 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || || | |||| |||||| || || ||||||||||| || || Sbjct 775 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 716 Query 15272 CAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| || ||| ||| | || || || || ||| ||||| ||||| ||||| Sbjct 715 TGGATTTT-CTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAAGGTGATGGT 657 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| || || |||||||||||||| Sbjct 656 CTTCCCGGTCAATGTCTTGACAAAAATTTGCAT 624 >seq2397 Length=4497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| || || || || || || || |||||||| ||| | | | || || Sbjct 1984 ACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCATCCTCC 1925 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||| || || || || ||||| ||||||||||| Sbjct 1924 AATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGG 1865 Query 15275 ATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| || ||| ||| | || |||||||| ||| ||||| ||||| ||||| || Sbjct 1864 ATTTT-CTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATGGTCTT 1806 Query 15334 ACCTGTCAGAGTTTTTAC 15351 ||| || || || || || Sbjct 1805 ACCAGTAAGGGTCTTGAC 1788 >seq2100 Length=597 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || || || || ||||| || ||| ||| | ||| Sbjct 379 AAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 320 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || || | |||| |||||| || || ||||||||||| || || Sbjct 319 TCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 260 Query 15272 CAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| || ||| ||| | || || || || ||| ||||| | ||| ||||| Sbjct 259 TGGATTTT-CTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGT 201 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||| || |||||||| |||||| Sbjct 200 CTTCCCAGTCAAAGTCTTGACAAAAATCTGCATA 167 >seq218 Length=95557 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || || || || ||||| || ||| ||| | ||| Sbjct 87597 AAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCT 87538 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||||||| || || || | |||| |||||| || || ||||||||||| || || Sbjct 87537 TCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCC 87478 Query 15272 CAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| || ||| ||| | || || || || ||| ||||| | ||| ||||| Sbjct 87477 TGGATTTT-CTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGT 87419 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || |||||||| |||||| Sbjct 87418 CTTCCCAGTCAATGTCTTGACAAAAATCTGCATA 87385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362143631512578