Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq7 84.2 2e-11 seq2397 82.4 6e-11 >seq7 Length=130303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||||| || || ||||| || || ||||| || | | || | |||| Sbjct 35896 AAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCT 35837 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| || || || |||| || || |||||||| || | ||| |||||||| Sbjct 35836 TCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCCTTCTTTGTCC 35777 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCT-CCGTTTCGACGGTAATGGT 19008 |||||||| || || | ||| ||| ||| ||||| || |||| ||| ||||| Sbjct 35776 TGGATTTTCTGCTTCACGTTCTCGATAGTGTCGG-AGGCTTCCACATCGAGGGTGATGGT 35718 Query 19009 TTTACCTGTTAAAGT 19023 |||||| || | ||| Sbjct 35717 TTTACCAGTGAGAGT 35703 >seq2397 Length=4497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||| ||||| || ||||||||||| | || || | ||||||| || Sbjct 1978 TGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCATCCTCCAATTGC 1919 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| | || |||||||||| || | ||| |||||||| |||||| Sbjct 1918 TTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTC 1859 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGC-TCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||||| || | | | ||||| | |||| ||| || | ||| ||||| ||||| || Sbjct 1858 TGTTTCACATTCTCAATGGTATC-CGAGGCTTCCACATCCAAGGTGATGGTCTTACCAGT 1800 Query 19018 TAAAGTTTTGAC 19029 | || ||||| Sbjct 1799 AAGGGTCTTGAC 1788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414532086100852