Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2397 100 2e-16 seq2100 93.3 3e-14 seq80 87.8 1e-12 seq3538 86.0 4e-12 seq3664 84.2 1e-11 seq218 84.2 1e-11 >seq2397 Length=4497 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| ||||||| || || || || || |||||||||||||||| | | || Sbjct 1990 CGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCA 1931 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||||||| ||| || || || ||||| |||| || ||||||||||| Sbjct 1930 TCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTG 1871 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || || |||||| || | | ||| || || || || || |||| || || Sbjct 1870 TCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATG 1811 Query 33335 GTTTTTCCCGTAAGAGTTTTTAC 33357 || || || ||||| || || || Sbjct 1810 GTCTTACCAGTAAGGGTCTTGAC 1788 >seq2100 Length=597 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| ||||| || | ||||| || || || |||||||| ||||| Sbjct 395 ACCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGA 336 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| | || |||||||||||||| ||| || | ||||||||| || | Sbjct 335 AA----GAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAG 280 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || ||||| || || || |||||| || | | ||||||||| | || Sbjct 279 GAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTT 220 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || | ||| || || ||||| ||||| Sbjct 219 CCACATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 >seq80 Length=198448 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| ||||||| || || || || || |||||||||||||| | | | || Sbjct 77015 CGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGTACGTCCA 77074 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| |||||| ||| || || || ||||| || | || ||||||||||| Sbjct 77075 TCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTG 77134 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || || |||||| || | | ||| || || || || || |||| || || Sbjct 77135 TCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATG 77194 Query 33335 GTTTTTCCCGTAAGAGTTTTTAC 33357 || || || ||||| || || || Sbjct 77195 GTCTTACCAGTAAGGGTCTTGAC 77217 >seq3538 Length=489 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| ||||| || | ||||| || || || |||||||| ||||| Sbjct 207 ACCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGA 266 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| | || |||||||||||||| ||| || | ||||||||| || | Sbjct 267 AA----GAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAG 322 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || ||||| || || || |||||| || | ||||||||| | || Sbjct 323 GAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCTT 382 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || | || || || ||||| ||||| Sbjct 383 CCACATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 434 >seq3664 Length=1078 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/232 (68%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| ||||| || | || || || || || |||||||| ||||| Sbjct 851 ACCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 792 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| | || |||||||||||||| ||| || | ||||||||| || | Sbjct 791 AA----GAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAG 736 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || ||||| || || || |||||| || | | ||||||||| | || Sbjct 735 GAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTT 676 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || || || || || | || || || ||||||||||| Sbjct 675 CCACATCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAAATTTGCAT 624 >seq218 Length=95557 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/232 (68%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| ||||| || | || || || || || |||||||| ||||| Sbjct 87385 ACCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 87326 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| | || |||||||||||||| ||| || | ||||||||| || | Sbjct 87325 AA----GAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAG 87270 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || ||||| || || || |||||| || | | ||| ||||| | || Sbjct 87269 GAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTT 87210 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || | || || || ||||||||||| Sbjct 87209 CCACATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATTTGCAT 87158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318746293848084