Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2349 123 2e-23 seq80 91.5 1e-13 >seq2349 Length=20186 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||| || | | |||||| || | ||| |||||| || || ||||||||| Sbjct 7469 ACCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGA 7528 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || |||| |||| ||||||||||| || || |||||||| || ||||| ||| |||| Sbjct 7529 CAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGG 7588 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| ||||| ||||| ||||| || | ||| ||||| | | |||||| Sbjct 7589 GATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCAC 7648 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| | || || || || ||||| ||||||| ||| Sbjct 7649 ATCCAGTGTGATGGTCTTGCCGGTCAAAGTCTGCAC 7684 >seq80 Length=198448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| ||||| || || || || || ||||| ||||| || ||| |||| || Sbjct 77020 CACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGTACGTCCATCCTC 77079 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||||||||| ||||| ||||| || ||||| || |||| | |||||||| ||| Sbjct 77080 CAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTG 77139 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| ||||| || | ||| ||||| | | |||||||| | || || || || Sbjct 77140 GATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAAGGTGATGGTCTT 77199 Query 44092 ACCGGTTAAAGTCTTCAC 44109 ||| || | ||||| || Sbjct 77200 ACCAGTAAGGGTCTTGAC 77217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354742758400584