Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3664 102 7e-17 seq218 96.9 3e-15 seq826 91.5 1e-13 seq3538 89.7 4e-13 seq2100 89.7 4e-13 seq1543 86.0 5e-12 seq470 86.0 5e-12 seq2397 82.4 6e-11 seq80 82.4 6e-11 >seq3664 Length=1078 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 850 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 791 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 790 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 731 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 730 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 671 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 |||| ||| ||||| || |||||||| || |||||||||||||||||| || Sbjct 670 TCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAAATTTGCATTGTT 620 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 1078 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 1019 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 1018 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 959 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 958 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACA 899 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || |||||||| || ||||||||||||||||| Sbjct 898 TCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAAATTTGCAT 852 >seq218 Length=95557 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 87384 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 87325 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 87324 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 87265 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 87264 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACA 87205 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 |||| ||| ||||| || || ||||| || |||||||||||||||||| || Sbjct 87204 TCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATTTGCATTGTT 87154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 ||| ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 87613 TCCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 87554 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 | |||| | |||||| ||||| || |||||| |||| || | || ||||| || Sbjct 87553 AAGAGTTCGACCATCTTCTAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 87494 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 87493 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCAC 87434 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || ||||||||||| ||||| Sbjct 87433 ATCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 87386 >seq826 Length=494 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 ||| ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 459 TCCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 400 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 399 AAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 340 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 339 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCAC 280 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || |||||||| || |||||||| || ||||| Sbjct 279 ATCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAGATCTGCAT 232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 230 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 171 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 170 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 111 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 110 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 51 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || |||||||| || ||||| Sbjct 50 TCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 4 >seq3538 Length=489 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 208 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAA 267 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 268 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 327 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 328 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCKCAATCGTGTCCGACGCTTCCACA 387 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || ||||||||||| ||||| Sbjct 388 TCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 434 >seq2100 Length=597 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 394 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAA 335 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 334 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 275 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 274 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 215 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || ||||||||||| ||||| Sbjct 214 TCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 >seq1543 Length=600 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 186 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 245 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 246 AGAGTTCGACCATCTTCCAATTGCTTYCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 305 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 306 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 365 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || |||||||| || ||||| Sbjct 366 TCCAGGGTGATGGTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 412 >seq470 Length=818 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 331 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 390 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 391 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 450 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 451 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACA 510 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || |||||||| || ||||| Sbjct 511 TCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 557 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || || || ||||| || Sbjct 559 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 618 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 619 AGAGTTCGACCATCTTCCAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 678 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 679 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACA 738 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || |||||||| || ||||| Sbjct 739 TCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 785 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||| ||||| || || || ||||| || | || ||||| || Sbjct 103 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTRAATATTGTAGTCAGAA 162 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||| || |||||| |||| || | || ||||| || Sbjct 163 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 222 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| || | ||| | || | |||| Sbjct 223 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 282 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || |||||||| || ||||| Sbjct 283 TCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 329 >seq2397 Length=4497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||| ||||| || |||||||| || || || |||||||| || ||| ||| Sbjct 1988 CAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCATC 1929 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||| || || ||| |||| | | ||| ||||| || | |||||||||||| Sbjct 1928 CTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTGTC 1869 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGG-TTCCGTTTCCACGGTAATGG 20174 ||||| |||||||| | ||| | ||| | ||| |||| |||| ||| |||| Sbjct 1868 TTGGATTTTCTGTTTCACATTCTCAATGGTATC-CGAGGCTTCCACATCCAAGGTGATGG 1810 Query 20175 TTTTGCCGGTCAACGTTTTGAC 20196 | || || || | || ||||| Sbjct 1809 TCTTACCAGTAAGGGTCTTGAC 1788 >seq80 Length=198448 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||| ||||| || |||||||| || || || |||||||| | ||| ||| Sbjct 77017 CAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGTACGTCCATC 77076 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||||| || ||| |||| | | ||| ||||| || | |||||||||||| Sbjct 77077 CTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTGTC 77136 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGG-TTCCGTTTCCACGGTAATGG 20174 ||||| |||||||| | ||| | ||| | ||| |||| |||| ||| |||| Sbjct 77137 TTGGATTTTCTGTTTCACATTCTCAATGGTATC-CGAGGCTTCCACATCCAAGGTGATGG 77195 Query 20175 TTTTGCCGGTCAACGTTTTGAC 20196 | || || || | || ||||| Sbjct 77196 TCTTACCAGTAAGGGTCTTGAC 77217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419545993652298