Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5 159 3e-34 >seq5 Length=391144 Score = 159 bits (176), Expect = 3e-34 Identities = 308/448 (69%), Gaps = 5/448 (1%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 ||||| |||||||| || | |||||| || || || | || || || || ||| Sbjct 174512 CATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAGAGA 174571 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaa 13269 || |||||||| || | ||||| |||||||| || | |||| || |||||||| ||||| Sbjct 174572 CCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTG-AGCAGAATGAACCCGAGAAAAA 174630 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 ||||||||||| || ||||| || || | | |||| | | | || || Sbjct 174631 GATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCGGATC 174690 Query 13330 TATCCACTTTCTG-GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 | |||| || | | ||||||| ||| || |||| || ||| || ||| ||||||| Sbjct 174691 TGTCCA-TTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATTGCGT 174749 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 | || | | | ||| || || | ||| ||| ||||| || || | | ||| | Sbjct 174750 TGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAATAGA 174809 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 ||| ||||| || ||||||| || ||||||||||| || ||||| | ||| || | | Sbjct 174810 CTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCAGGCA 174869 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 | || |||||| | ||| |||| || | || ||||| || || || || || |||| Sbjct 174870 CTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTTGCAG 174929 Query 13569 CaaaaaaaGCAAGTATGT-GCTTAATAA 13595 |||| |||||||| | || ||| || || Sbjct 174930 CAAAGAAAGCAAGGACGTAGCTCAAGAA 174957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430940074565316