Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq80 91.5 1e-13 seq470 89.7 5e-13 seq2397 87.8 2e-12 seq826 84.2 2e-11 seq3592 82.4 7e-11 seq1543 82.4 7e-11 >seq7 Length=130303 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| ||||| || |||||||| || | ||| || ||| | |||| | Sbjct 35899 CGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCG 35840 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | || || | ||||||||||| || || || ||||||||| Sbjct 35839 TCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCCTTCTTTG 35780 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||| ||| ||| |||||| | | || || || | |||||| Sbjct 35779 TCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACATCGAGGGTGATG 35720 Query 94973 GTTTTTCCAGTAAGAGT 94989 ||||| ||||| ||||| Sbjct 35719 GTTTTACCAGTGAGAGT 35703 >seq80 Length=198448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||| ||| || |||| |||||||||||| || | || ||||| |||| || | Sbjct 77015 CGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAG--ATAGAGTACGTC 77072 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||| |||||||| |||| || |||| |||||||| |||||||| ||||||| Sbjct 77073 CATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCCTTCTT 77132 Query 94911 TGTCATAAATTTT 94923 |||| | ||||| Sbjct 77133 TGTCTTGGATTTT 77145 >seq470 Length=818 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| |||||||| | ||| |||||||| || | || || || | || ||| || Sbjct 343 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAG--AAAGAGTTCGAC 400 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || ||||| |||| || | | ||||||||| |||||||| ||||| | Sbjct 401 CATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCT 460 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||| ||||| | | ||||| | || || || | |||| Sbjct 461 TATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGA 520 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | ||| || |||||||||||||| Sbjct 521 TGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 557 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| |||||||| | ||| |||||||| | | || || || | || ||| || Sbjct 115 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTRAATATTGTAGTCAG--AAAGAGTTCGAC 172 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || ||||| |||| || | | ||||||||| |||||||| ||||| | Sbjct 173 CATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCT 232 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||| ||||| | | ||||| | || || || | |||| Sbjct 233 TATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGA 292 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | ||| || |||||||||||||| Sbjct 293 TGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| |||||||| | ||| |||||||| || | || || || | || ||| || Sbjct 571 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAG--AAAGAGTTCGAC 628 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || || || |||| || | | ||||||||| |||||||| ||||| | Sbjct 629 CATCTTCCAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCT 688 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||| ||||| | | ||||| | || || || | |||| Sbjct 689 TATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGA 748 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | ||| || |||||||||||||| Sbjct 749 TGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 785 >seq2397 Length=4497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| || |||| |||||||||||| || | || ||||| || ||| | Sbjct 1990 CGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGTACGTCCA 1931 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| || ||||| |||| || |||| |||||||| |||||||| ||||||||| Sbjct 1930 TCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTG 1871 Query 94913 TCATAAATTTT 94923 || | ||||| Sbjct 1870 TCTTGGATTTT 1860 >seq826 Length=494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| |||||||| | ||| |||||||| || | || || || | || ||| || Sbjct 218 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAG--AAAGAGTTCGAC 161 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || ||||| |||| || | | ||||||||| |||||||| ||||| | Sbjct 160 CATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCT 101 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||| ||||| | | ||||| | || || || | |||| Sbjct 100 TATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGA 41 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | || || |||||||||||||| Sbjct 40 TGGTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 4 >seq3592 Length=385 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 94802 AAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCA 94859 ||||| | ||| |||||||| || | || || || | || ||| || ||| |||| Sbjct 385 AAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAG--AAAGAGTTCGACCATCTTCCA 328 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 || ||||| |||| || | | ||||||||| |||||||| ||||| || || | | Sbjct 327 ATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 268 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 |||| ||||| | | ||||| | || ||||| | |||||||| || | Sbjct 267 TTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACGTCCAAGGTGATGGTCTTCC 208 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| | ||| || |||||||||||||| Sbjct 207 CAGTCAAAGTCTTGACAAAGATCTGCAT 180 >seq1543 Length=600 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| |||||||| | ||| |||||||| || | || || || | || ||| || Sbjct 198 CGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAG--AAAGAGTTCGAC 255 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || || || |||| || | | ||||||||| |||||||| ||||| | Sbjct 256 CATCTTCCAATTGCTTYCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCT 315 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||| ||||| | | ||||| | || || || | |||| Sbjct 316 TATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGA 375 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | || || |||||||||||||| Sbjct 376 TGGTCTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246045868880