Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq295 150 3e-31 >seq295 Length=301924 Score = 150 bits (166), Expect = 3e-31 Identities = 359/533 (67%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 193641 CCTGCTGAGATCTATAATCTTGGT-GCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCC 193699 ||| | ||| | || || ||||| || ||||||||||| | || || || || ||| Sbjct 77802 CCTTCGGAGGTGTACAA-CTTGGCAGCCCAAAGTCATGTGATGGTCTCGTTCGAAATGAG 77860 Query 193700 AGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCA--GTTCGT 193757 ||||| || | || ||||||||| | || ||||||||| | ||| | ||| ||| | Sbjct 77861 CGAGTACACAGCCAACGTTGATGCTCTTGGGACTCTTAGACTTCTTAATGCACTGTTAGC 77920 Query 193758 ATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT 193817 || || ||||| | ||| || | ||||| |||||||| || ||||||||||| Sbjct 77921 CTGC-GGTCTCGGAGATAAGTGT-CGATTTTATCAAGCATCTACGAGTGAACTGTATGGC 77978 Query 193818 GGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 || | || | ||| | | | |||| ||||| || |||| ||||||||||| | Sbjct 77979 AAAGTCCAAGAGATTCCTCAAACCGAAAAGACACCGTTCTATCCGCGCTCTCCTTACGCC 78038 Query 193878 GTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCAC 193937 ||||| || || || | |||| ||| | || || | || |||| | Sbjct 78039 GTAGCCAAACAGTTCGGCTTCTGGAACATAATCAACTACAGAGAAGCATACAACATGTTT 78098 Query 193938 GCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACT 193997 || || ||||||||| |||||||||||||| || ||||| ||| ||| ||||| ||| Sbjct 78099 GCATGTAATGGTATTCTGTTCAATCACGAATCCCCTAGAAGGGGTCCGACGTTTGTGACT 78158 Query 193998 CGTAAGATTACACAAG--GTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATC 194055 | || ||||| | | || | || || | | || ||| | | | |||| Sbjct 78159 AGGAAAATTACTCGTGCCGTGGCGCGAA-TTCAC-CTCGGCAAGCAGCAAACAGTGTATC 78216 Query 194056 TTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGT 194115 | || || || || || || | || ||||| ||||||||||| || | || | |||| Sbjct 78217 TCGGAAACCTGAACGCGAAACGAGACTGGGGTCACGCAAAGGACTACATAGAGGGTATGT 78276 Query 194116 GGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 |||||||| |||| || ||| |||| || || ||||| | || || || ||| Sbjct 78277 GGTTAATGCTGCAGCAAGATCAACCAGAGGACTATGTCTTGGCCACCGGAGAA 78329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807473859002480