Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 >seq5 Length=391144 Score = 116 bits (128), Expect = 4e-21 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||| ||||| ||||||||||| | ||||| ||||| || ||||||||||| || Sbjct 174508 CAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCA 174567 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCTGAAA 21590 | ||| ||||| | ||| |||||||||| |||||| ||||| ||| |||| || || | Sbjct 174568 GAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGA-GCAGAATGAACCCGAGA 174626 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631 | || || || ||||| ||||||||||||| | ||||||| Sbjct 174627 AAAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCA 174667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531847224291920