Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 181 1e-40 >seq5 Length=391144 Score = 181 bits (200), Expect = 1e-40 Identities = 301/433 (70%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| ||||||||||| || || || || ||||| || ||| | ||| || || || Sbjct 174508 CAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCA 174567 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| || ||||| || || | |||||| | |||||| || || |||||| || || || Sbjct 174568 GAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGAGCAGAATGAACCCGAGAA 174627 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC----GCTGT 33475 ||||||||||| || |||||||| ||||||| || || | | ||| || | Sbjct 174628 AAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCGG 174687 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 || | |||| | | ||||| || |||||| ||| ||||| || || |||| || | Sbjct 174688 -ATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATTG 174746 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | || || || | || ||| || || ||||||||| ||||| ||||| | || || Sbjct 174747 CGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAAT 174806 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 | | ||| ||||| |||||||| | || || || || ||||||||||| | ||| || | Sbjct 174807 AGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCAG 174866 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | |||||||| | ||| ||| || | ||| || ||||| || || || || | Sbjct 174867 GCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTTG 174926 Query 33716 CTGCAAAAAACGC 33728 | ||||| || || Sbjct 174927 CAGCAAAGAAAGC 174939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622884453643280