Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1217 215 1e-50 seq5 96.9 9e-15 seq745 91.5 4e-13 seq164 91.5 4e-13 >seq1217 Length=25202 Score = 215 bits (238), Expect = 1e-50 Identities = 305/425 (72%), Gaps = 4/425 (1%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 |||| || || || ||||| |||| |||||||| ||||| || ||||| | | Sbjct 15858 ATTGCCGAGCGACCTCAGCACATGTACATGCGTGTCGCTATCGGCATCCACAAGGAGAAC 15799 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCA 363559 ||||| || |||||||| || || || | || | | | || ||||||||||| | Sbjct 15798 ATTGATCGTGCAATTGAAACGTACAA--TTTGATGTCCCAGCGGTACTTCACGCACGCTA 15741 Query 363560 CGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAA 363619 |||||||| ||| ||| || || ||| || || ||| ||||||||||||| | || | Sbjct 15740 CGCCAACATTGTTCAACGCCGGCACTGAAAAGCCCCAGCTGTCTTCTTGCTTCTTGCTGA 15681 Query 363620 AAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTT 363679 |||||| || || || || || |||| || ||||| || | |||||| ||||| Sbjct 15680 CGATGAAGAGTGACTCGATTGAAGGAATCTACGATACACTAAAAAGTTGTGCATGTATTT 15621 Query 363680 CCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACA 363739 ||||| |||| |||||||| || || |||| ||||| ||||| | || | ||||| Sbjct 15620 CCAAGTATGCGGGCGGAATCGGGTTAGCGATTCACAACATTCGTTCTACGAGCTCTTACA 15561 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || || || |||||||||| | || || ||||| ||||||||| | | Sbjct 15560 TTCGGGGAACGAACGGTACCTCGAATGGGATCGTGCCTATGCTCCGTGTGTTTAGTGACA 15501 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCG 363859 | || || ||||| || || |||||||| |||||||| ||| ||||||| || ||||| | Sbjct 15500 CCGCCAGATACGTTGATCAAGGTGGAGGCAAGCGCAAGGGGTCGTTTGCCATTTATCTGG 15441 Query 363860 AGCCT 363864 | ||| Sbjct 15440 AACCT 15436 Score = 181 bits (200), Expect = 3e-40 Identities = 652/1000 (65%), Gaps = 61/1000 (6%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || || ||||| |||||||| || ||||||| || ||||| ||||| || || |||||| Sbjct 15059 GCGCAAAAGCTGTGGTTTGCTATACTGGATTCTCAAATTGAAACAGGCACTCCGTATATG 15000 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||||||||||| || ||| || || | ||||||||||| || Sbjct 14999 CTCTACAAGGATTCGTGCAATGCGAAAAGCAATCAACAAAATCTTGGTACAATCAAGTGC 14940 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290 |||| | |||||||| ||| | || ||||||||||| || ||||| || || || || Sbjct 14939 TCCAACTTGTGTACCGAAATTGTAGAGTACACCGCTCCAGATGAGACAGCAGTCTGCAAT 14880 Query 364291 CTTGCGTCGATCGCGCTTCCGGCGTTTGT---AAAAGATG---------GTAC---TTTT 364335 ||||| || || || |||||| | |||||| | || |||| Sbjct 14879 CTTGCCAGCATTGCCCTGAATATGTTTGTGCAAGAAGATGAGGATGGTCGGACATATTTT 14820 Query 364336 GACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATC 364395 ||||| ||||||| | || || || | || ||||||| || | || || Sbjct 14819 GACCATGAGCATCTGAAGGATGTTACAAGGGTCGTCACGCGCAATCTGAACCAAGTCATT 14760 Query 364396 GACAAGAATTATTATCCAATTCCTGAAGC-CG-AGCGTTCTAATATGCGTCATCGCCCGA 364453 || |||||| ||||| | || || || || | | || || |||||||||||||| | Sbjct 14759 GATCTGAATTACTATCCTGTGCCCGAGGCACGCAAC--TCCAACATGCGTCATCGCCCAA 14702 Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGG------CAT 364507 |||| ||||||| || ||||| |||||| | || | |||| ||||| ||| Sbjct 14701 TTGGCATTGGTGTGCAAGGCCTTGCTGAC-TGCTTCT--TGCT---GATGGGCTACCCAT 14648 Query 364508 TTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT---TTG 364564 | || || || ||||| | || || || || |||||||| ||||| || | | Sbjct 14647 TCGAATCTGAAGAAGCTCGAATGCTGAACAAAGAAATCTTTGAGACAATTTACTACGGAG 14588 Query 364565 CCGCAATGACTGCTTCGTGTGATT--TGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 |||| | || | || | || || | || ||||| || | |||||||| Sbjct 14587 CCGC-TTCACAATCTATTGAGCTTGCTGCCGAA----GAGGGACCCTATGCCACTTATGA 14533 Query 364623 GGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTG 364681 || || ||| | | || || || ||||| ||||| |||||| ||||| || || | Sbjct 14532 AGGATCGCCCGCAAGC-CAAGGGAAGTTCCAATTTGACCTATGGGGAGTCACTCCGTCCG 14474 Query 364682 TCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGC--ATGGTACTCGCAACTC 364739 | ||||| |||||| | || | | || || | ||| |||| | | ||||| Sbjct 14473 ACAGATGGGACTGGGGCTCCCT-CAGGGAATCGCTACG-AGCTAATGGCATGAGGAACTC 14416 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 || || || || ||||| || ||| ||||| || |||||||| ||||||||| | Sbjct 14415 TCTGCTTGTGGCACCGATGCCTACTGCTAGCACTGCCCAAATCCTCGGTAACAACGAGAG 14356 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 | | || || || || ||||| | || | | ||||||||| | ||||||||| | Sbjct 14355 CATTGAGCCCTTCACCAGCAACATATACACGAGACGGGTTCTTGCTGGAGAATTTGCCTG 14296 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGG---GGTGACAGCAT 364916 || || || || | |||| ||| | || || || | ||| | ||| | Sbjct 14295 CGTAAACAAACACATGCTCAAAGATTTCATTGAACGAGGAATTTGGACTGCTGAGGTCCG 14236 Query 364917 GAA-GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAG 364975 ||| ||| | || || || || || || |||||||| | | || || | Sbjct 14235 GAATCAAC----TGATTGCAAACAAGGGATCCGTTCAGAACATCGACGTCGTGCCGGACG 14180 Query 364976 ATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT---GATA 365032 | ||||| | ||||||||||| |||||| | | || || |||| |||| Sbjct 14179 AGCTGAAAGAATTGTACAAAACCGTGTGGGAAGT---GAAGCAAAAGAGCATTCTGGATA 14123 Query 365033 TGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTC 365072 ||||||||||||||| | || || || ||||||||||| Sbjct 14122 TGGCGGCCGATCGCGCCCCGTTCATTTGCCAGAGCCAGTC 14083 >seq5 Length=391144 Score = 96.9 bits (106), Expect = 9e-15 Identities = 149/209 (71%), Gaps = 9/209 (4%) Strand=Plus/Minus Query 22441 AAGGCAGATTGGGCGCTGAAATGGAT-GAACA-----ATGAACGTTCATTCGCGGAACGT 22494 |||||||| ||||||||| |||||| || | ||| | | | ||| | ||||| Sbjct 174717 AAGGCAGACTGGGCGCTGCAATGGACAGATCCGGCTTATG--CCTCCTTTC-CTGAACGA 174661 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 ||||||||||||||| |||||||| || || || || || |||| || |||||||| Sbjct 174660 GTTATTGCATTTGCTGCTGTTGAAGGAATCTTTTTCTCGGGTTCATTCTGCTCAATCTTT 174601 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||| ||||||| | | | ||||||| ||||| || || ||||| || ||| | | Sbjct 174600 TGGATAAAAAAGAGGGGACTTATGCCTGGTCTCTGCTTCTCTAATGAATTGATTTCCAGG 174541 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 || || || || ||| ||||| || || Sbjct 174540 GACGAAGGACTACATTGTGATTTCGCATG 174512 >seq745 Length=3037 Score = 91.5 bits (100), Expect = 4e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 111735 CAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTAC 111794 || ||||| || ||||| || || || ||||||||||| || || ||||||||||| || Sbjct 1256 CAGATGTACCAACGATCGGCGGACATGGGTCTTGGTGTCCCTTTCAATATTGCAAGCTAT 1315 Query 111795 GCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCAC 111854 || || || || | ||||||||||| |||| | | | || ||| | |||| Sbjct 1316 GCTCTGCTAACCAGGTTAATCGCTCAAGTTACGGGATTACGAGCTGGAGAACTTGTTCAT 1375 Query 111855 GTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGTTGAAG 111914 || || ||||||||||| || || |||||||| || | || ||| || ||||| Sbjct 1376 GTCATTGGAGATGCGCACGTGTATCTCAACCACATCGACCCCCTGAAAGAGCAATTGAAA 1435 Query 111915 CGCAAACCAT 111924 || || ||| Sbjct 1436 CGGTAAGCAT 1445 >seq164 Length=23564 Score = 91.5 bits (100), Expect = 4e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 111735 CAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTAC 111794 || ||||| || ||||| || || || ||||||||||| || || ||||||||||| || Sbjct 16256 CAGATGTACCAACGATCGGCGGACATGGGTCTTGGTGTCCCTTTCAATATTGCAAGCTAT 16197 Query 111795 GCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCAC 111854 || || || || | ||||||||||| |||| | | | || ||| | |||| Sbjct 16196 GCTCTGCTGACCAGGTTAATCGCTCAAGTTACGGGATTACGAGCTGGAGAACTTGTTCAT 16137 Query 111855 GTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGTTGAAG 111914 || || ||||||||||| || || |||||||| || | || ||| || ||||| Sbjct 16136 GTCATTGGAGATGCGCACGTGTATCTCAACCACATCGACCCCCTGAAAGAGCAATTGAAA 16077 Query 111915 CGCAAACCAT 111924 || || ||| Sbjct 16076 CGGTAAGCAT 16067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303219037701356