Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 3e-15 seq2397 86.0 5e-12 >seq7 Length=130303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| ||| | || ||| |||| || || ||| |||||| |||||| | || || || Sbjct 35709 ACTGGTAAAACCATCACCCTCGATGTGGAAGCCTCCGACACTATCGAGAACGTGAAGCAG 35768 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || || |||||||||||||| || || ||||| || || || |||| || || ||| Sbjct 35769 AAAATCCAGGACAAAGAAGGCATCCCGCCTGATCAGCAAAGGCTCATTTTCGCAGGGAAG 35828 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 || || ||||| | | | | || ||| || ||||| || || ||||| || | ||| Sbjct 35829 CAGCTGGAAGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCAACCTTGCAT 35888 Query 24195 TTAGTGTT 24202 || || || Sbjct 35889 TTGGTCTT 35896 >seq2397 Length=4497 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || ||| | || || || ||| || ||||| ||| | || ||||| Sbjct 1800 ACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAGAATGTGAAACAG 1859 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || || |||||||||||||| ||||| ||||| ||| || |||||| | || ||| Sbjct 1860 AAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGCAGCGATTGATTTTTGCTGGAAAG 1919 Query 24135 CAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATAACATTCAAAAAGAATCTACAATTC 24192 ||| | || ||| ||| | | ||| ||||| || || || || |||||||| | | Sbjct 1920 CAATTGGAGGATGGACGTACTCTGTC--TGATTACAATATCCAGAAGGAATCTACTCTGC 1977 Query 24193 ATTTAGTG 24200 |||||||| Sbjct 1978 ATTTAGTG 1985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429893777328990