Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 seq2397 104 2e-17 seq2349 93.3 4e-14 seq1217 93.3 4e-14 seq263 93.3 4e-14 seq250 93.3 4e-14 seq80 91.5 1e-13 >seq7 Length=130303 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131005 GAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCG 131064 |||||||| || | ||||| || ||||| | ||| || ||||| || |||||||| ||| Sbjct 35914 GAGCCACCACGAAGACGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCG 35855 Query 131065 CTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGA 131124 | ||||| ||| || |||||||| |||||| | || | | ||||| || || Sbjct 35854 GAGAGAGTGCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGC 35795 Query 131125 GGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 ||||| ||||||||||| |||||||||||| | | ||| | ||| |||| || || Sbjct 35794 GGGATGCCTTCTTTGTCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCC 35735 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | |||| ||| | ||||||||| || ||||| Sbjct 35734 ACATCGAGGGTGATGGTTTTACCAGTGAGAGT 35703 >seq2397 Length=4497 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||||||||| | || || ||||| || || |||||||| | Sbjct 2002 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAC 1943 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| | ||||| || || | || || |||||||| |||||||| Sbjct 1942 AGAGTACGTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGA 1883 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||||||| || | | ||| | ||||| | || || | Sbjct 1882 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 1823 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| | ||| ||||| || || || || || Sbjct 1822 TCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 1788 >seq2349 Length=20186 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| ||||| || || | || ||||| || || ||||| |||||| | Sbjct 7470 CCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGAC 7529 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| || || | || || || ||| | || || |||||||| ||||||||| Sbjct 7530 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGG 7589 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||||||||| || | | ||| | ||||| | || ||| | Sbjct 7590 ATGCCTTCCTTATCCTGGATTTTCTGTTTCACGTTCTCAATGGTATCAGAGGCCTCCACA 7649 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | ||| || ||||| | ||| Sbjct 7650 TCCAGTGTGATGGTCTTGCCGGTCAAAGT 7678 >seq1217 Length=25202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 145639 ATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCT 145698 ||| || ||||| ||||| || | || |||| | ||| || |||| ||||| ||| Sbjct 14880 ATTGCAGACTGCTGTCTCATCTGGAGCGGTGTACTCTACAATTTCGGTACACAAGTTGGA 14939 Query 145699 ACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAG 145758 || ||||| || || |||||||| ||||| |||||| ||||||| ||||||||||| Sbjct 14940 GCACTTGATTGTACCAAGATTTTGTTGATTGCTTTTCGCATTGCACGAATCCTTGTAGAG 14999 Query 145759 CATGTACGG 145767 ||| ||||| Sbjct 15000 CATATACGG 15008 >seq263 Length=166476 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||||| || || ||||| || |||||||| || Sbjct 119187 CCACCACGGAGGCGCAGTACGAGATGTAAAGTAGATTCCTTCTGGATGTTGTAGTCCGAT 119128 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || ||||||| |||||||| || || ||| Sbjct 119127 AGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATTAATCGCTGCTGATCAGGCGGG 119068 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 |||||||| || || |||||||||||| Sbjct 119067 ATTCCTTCCTTATCCTGGATTTTCTGCTT 119039 >seq250 Length=105897 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || ||||| || || ||||| ||| Sbjct 9424 CCACCACGGAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAA 9483 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | |||||| || ||| | || || |||||||| ||||| || Sbjct 9484 AGAGTGCGTCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGA 9543 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| ||||| |||||||||||||| Sbjct 9544 ATGCCTTCCTTGTCCTGGATTTTCTGCTTGA 9574 >seq80 Length=198448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||||||||| | || || ||||| || || |||||||| Sbjct 77003 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAT 77062 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| | || || || || | || || |||||||| || ||||| Sbjct 77063 AGAGTACGTCCATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 77122 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||||||| || | | ||| | ||||| | || || | Sbjct 77123 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 77182 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| | ||| ||||| || || || || || Sbjct 77183 TCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 77217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471965256510720