Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3664 82.4 6e-11 seq2397 82.4 6e-11 >seq3664 Length=1078 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| || || || || ||||| || || |||||||| | Sbjct 850 CCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAA 791 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||||||| || |||||| |||| || || || || || ||| Sbjct 790 AGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGGA 731 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || || || |||| ||| || || | | | ||||| | ||| Sbjct 730 ATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACA 671 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || ||||||| || ||||||||||| |||||| Sbjct 670 TCCAAGGTGATGGTCTTCCCGGTCAATGTCTTGACAAAAATTTGCATT 623 >seq2397 Length=4497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||||| || || ||||| || || ||||| || | | Sbjct 2002 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAC 1943 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||||| || || ||| |||| | ||||| || ||| ||| Sbjct 1942 AGAGTACGTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGA 1883 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| ||| ||||| | | | || || || ||| Sbjct 1882 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 1823 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGAC 16923 |||| ||||||||| || || || || || ||||| Sbjct 1822 TCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 1788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405048217573420