Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 167 3e-36 seq1217 82.4 1e-10 >seq5 Length=391144 Score = 167 bits (184), Expect = 3e-36 Identities = 300/434 (69%), Gaps = 7/434 (2%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| ||||||||||| || ||||| || ||||| || ||| ||||| || || || Sbjct 174508 CAAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCA 174567 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 ||| || ||||| || || | |||||| | |||||| || || ||| ||||| || || | Sbjct 174568 GAGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGA-GCAGAATGAACCCGAGA 174626 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC----GCTG 32831 | || |||||||| || || ||||| ||||||| || || | | ||| || | Sbjct 174627 AAAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCG 174686 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 || | |||| | | ||||| || |||||| ||| ||||| || || || | || Sbjct 174687 -GATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATT 174745 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || || || | || ||| || || ||||||||| || || || || | || | Sbjct 174746 GCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAA 174805 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 || | ||| ||||| |||||||| | || ||||| || |||||||| || | ||| || Sbjct 174806 TAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCA 174865 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | | |||||||| | ||| ||| || | ||| || ||||| || || || || Sbjct 174866 GGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTT 174925 Query 33072 GCTGCAAAAAACGC 33085 || ||||| || || Sbjct 174926 GCAGCAAAGAAAGC 174939 >seq1217 Length=25202 Score = 82.4 bits (90), Expect = 1e-10 Identities = 279/427 (65%), Gaps = 6/427 (1%) Strand=Plus/Plus Query 63176 TCAGAATGCCACGGTTCCAAGTATATGGCCATA-ACTCCAGGCCGTTTGTTTCCTCCCTG 63234 |||| ||||| ||||||| || ||||| | || || || | ||| ||| || || Sbjct 15425 TCAGCGTGCCAAGGTTCCAGATAAATGGCAAACGACCCCTTGC-GCTTGCCTCCACCTTG 15483 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 63294 ||| | |||||| ||||||| | || | || | | ||| || | || ||||| || || Sbjct 15484 ATCAACGTATCTGGCGGTGTCACTAAACACACGGAGCATAGGCACGATCCCATTCGAGGT 15543 Query 63295 ACCATTGGT-CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 63353 ||| || || ||| || || || | | | |||||| || ||| | || || | Sbjct 15544 ACCGTTCGTTCCCCGA-ATGTAAGAGCTCGTAGAACGAATGTTGTGAATCGCTAACCCGA 15602 Query 63354 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 63413 |||| || || || || || |||| || | ||||| ||||| ||||| || || | Sbjct 15603 TTCCGCCCGCATACTTGGAAATACATGCACAACTTTTTAGTGTATCGTAGATTCCTTCAA 15662 Query 63414 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 63473 | ||| | |||| | || | || || ||||| ||| | ||| || | Sbjct 15663 TCGAGTCACTCTTCATCGTCAGCAAGAAGCAAGAAGACAGCTGGGGCTTTTCAGTGCCGG 15722 Query 63474 CATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63533 | || || || || || | |||||| || || | | || | | ||||||||| | Sbjct 15723 CGTTGAACAATGTTGGCGTAGCGTGCGTGAAGTACCGCTGGGACATCAAATTGTACGTTT 15782 Query 63534 CAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592 |||| || || || | | | ||| || || || | ||||||||||| |||||||| Sbjct 15783 CAATTGCACGATCAATGTTCTCCTTG-TGGATGCCGATAGCGACACGCATGTACATGTGC 15841 Query 63593 TGAGGTC 63599 ||||||| Sbjct 15842 TGAGGTC 15848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633568177416800